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Related entities (42)
Mentioned in (114)
Papers in which this entity is mentioned.
- A guide to transcriptomic deconvolution in cancer. (2026)
- Single-cell exon deletion profiling reveals splicing events that shape gene expression and cell state dynamics. (2026)
- Specificity, length and luck drive gene rankings in association studies. (2026)
- Modeling heterogeneity in single-cell perturbation states enhances detection of response eQTLs. (2025)
- Integrated single-cell multiomic profiling of caudate nucleus suggests key mechanisms in alcohol use disorder. (2025)
- Single cell and spatial alternative splicing analysis with Nanopore long read sequencing. (2025)
- Yield of genetic association signals from genomes, exomes and imputation in the UK Biobank. (2024)
- Global impact of unproductive splicing on human gene expression. (2024)
- DNA methylation at birth and lateral ventricular volume in childhood: a neuroimaging epigenetics study. (2024)
- Transient loss of Polycomb components induces an epigenetic cancer fate. (2024)
- Genome-wide association analyses identify 95 risk loci and provide insights into the neurobiology of post-traumatic stress disorder. (2024)
- Machine learning for genetics-based classification and treatment response prediction in cancer of unknown primary. (2023)
- Multiomic prioritisation of risk genes for anorexia nervosa. (2023)
- Multi-trait genome-wide association study of opioid addiction: OPRM1 and beyond. (2022)
- Parsing genetically influenced risk pathways: genetic loci impact problematic alcohol use via externalizing and specific risk. (2022)
- Variant interpretation using population databases: Lessons from gnomAD. (2022)
- Inferring gene expression from cell-free DNA fragmentation profiles. (2022)
- Gene-based polygenic risk scores analysis of alcohol use disorder in African Americans. (2022)
- Evaluating the transcriptional fidelity of cancer models. (2021)
- Detecting cell-type-specific allelic expression imbalance by integrative analysis of bulk and single-cell RNA sequencing data. (2021)
- Large-scale cis- and trans-eQTL analyses identify thousands of genetic loci and polygenic scores that regulate blood gene expression. (2021)
- Multivariate analysis of 1.5 million people identifies genetic associations with traits related to self-regulation and addiction. (2021)
- Rapid genotype imputation from sequence with reference panels. (2021)
- Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes. (2021)
- Interpretation of risk loci from genome-wide association studies of Alzheimer's disease. (2020)
- Nicotine and Its Downstream Metabolites in Maternal and Cord Sera: Biomarkers of Prenatal Smoking Exposure Associated with Offspring DNA Methylation. (2020)
- PEREGRINE: A genome-wide prediction of enhancer to gene relationships supported by experimental evidence. (2020)
- ASEP: Gene-based detection of allele-specific expression across individuals in a population by RNA sequencing. (2020)
- Detecting cell-type-specific allelic expression imbalance by integrative analysis of bulk and single-cell RNA sequencing data (2020)
- Data structures based on <i>k</i> -mers for querying large collections of sequencing datasets (2019)
- Sex differences in the genetic architecture of obsessive-compulsive disorder. (2019)
- Integrating predicted transcriptome from multiple tissues improves association detection. (2019)
- Genome-wide association study reveals novel loci associated with body size and carcass yields in Pekin ducks. (2019)
- Integrating predicted transcriptome from multiple tissues improves association detection. (2019)
- Single-cell multiomic analysis identifies regulatory programs in mixed-phenotype acute leukemia. (2019)
- Alcohol and endogenous aldehydes damage chromosomes and mutate stem cells. (2018)
- Exploring the phenotypic consequences of tissue specific gene expression variation inferred from GWAS summary statistics. (2018)
- Positively selected enhancer elements endow osteosarcoma cells with metastatic competence. (2018)
- Long-term ethanol exposure: Temporal pattern of microRNA expression and associated mRNA gene networks in mouse brain. (2018)
- PASSPORT-seq: A Novel High-Throughput Bioassay to Functionally Test Polymorphisms in Micro-RNA Target Sites. (2018)
- Identification of novel candidate disease genes from de novo exonic copy number variants. (2017)
- Analysis of 100,000 human cancer genomes reveals the landscape of tumor mutational burden. (2017)
- Universal Patterns of Selection in Cancer and Somatic Tissues. (2017)
- Ensembl 2017. (2017)
- Evaluation of in silico algorithms for use with ACMG/AMP clinical variant interpretation guidelines. (2017)
- The genomic landscape of balanced cytogenetic abnormalities associated with human congenital anomalies. (2017)
- BECon: a tool for interpreting DNA methylation findings from blood in the context of brain. (2017)
- De Novo Coding Variants Are Strongly Associated with Tourette Disorder. (2017)
- The impact of structural variation on human gene expression. (2017)
- The Ensembl gene annotation system. (2016)
- Nuclear organization and 3D chromatin architecture in cognition and neuropsychiatric disorders. (2016)
- New insights into the generation and role of de novo mutations in health and disease. (2016)
- GeneiASE: Detection of condition-dependent and static allele-specific expression from RNA-seq data without haplotype information. (2016)
- The Reactome pathway Knowledgebase. (2016)
- Global analysis of somatic structural genomic alterations and their impact on gene expression in diverse human cancers. (2016)
- Possible relationship between common genetic variation and white matter development in a pilot study of preterm infants. (2016)
- GenVisR: Genomic Visualizations in R. (2016)
- DGIdb 2.0: mining clinically relevant drug-gene interactions. (2016)
- Detecting Genomic Signatures of Natural Selection with Principal Component Analysis: Application to the 1000 Genomes Data. (2016)
- The National Birth Defects Prevention Study: A review of the methods. (2015)
- Recent genetic findings in schizophrenia and their therapeutic relevance. (2015)
- A gene-based association method for mapping traits using reference transcriptome data. (2015)
- Dissecting ancestry genomic background in substance dependence genome-wide association studies. (2015)
- An introductory review of parallel independent component analysis (p-ICA) and a guide to applying p-ICA to genetic data and imaging phenotypes to identify disease-associated biological pathways and systems in common complex disorders. (2015)
- Genome-Wide Meta-Analysis of Longitudinal Alcohol Consumption Across Youth and Early Adulthood. (2015)
- SEQMINER: An R-Package to Facilitate the Functional Interpretation of Sequence-Based Associations. (2015)
- Comparison of RNA-seq and microarray-based models for clinical endpoint prediction. (2015)
- Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. (2014)
- MBASED: allele-specific expression detection in cancer tissues and cell lines. (2014)
- Guidelines for investigating causality of sequence variants in human disease. (2014)
- Heritability and molecular-genetic basis of the P3 event-related brain potential: a genome-wide association study. (2014)
- Transcriptome sequencing of a large human family identifies the impact of rare noncoding variants. (2014)
- Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. (2014)
- Whole-exome sequencing and clinical interpretation of formalin-fixed, paraffin-embedded tumor samples to guide precision cancer medicine. (2014)
- Heritability and genomics of gene expression in peripheral blood. (2014)
- Heritability and molecular-genetic basis of resting EEG activity: a genome-wide association study. (2014)
- Genetic variability in the regulation of gene expression in ten regions of the human brain. (2014)
- Somatic rearrangements across cancer reveal classes of samples with distinct patterns of DNA breakage and rearrangement-induced hypermutability. (2013)
- Candidate gene association studies: a comprehensive guide to useful in silico tools. (2013)
- Integrative analysis of complex cancer genomics and clinical profiles using the cBioPortal. (2013)
- ACMG clinical laboratory standards for next-generation sequencing. (2013)
- Fusion genes and their discovery using high throughput sequencing. (2013)
- A cross-platform analysis of 14,177 expression quantitative trait loci derived from lymphoblastoid cell lines. (2013)
- DGIdb: mining the druggable genome. (2013)
- An APOBEC cytidine deaminase mutagenesis pattern is widespread in human cancers. (2013)
- Strain dependent gene expression and neurochemical levels in the brain of zebrafish: focus on a few alcohol related targets. (2012)
- Landscape of transcription in human cells. (2012)
- The genetics of alcohol dependence: advancing towards systems-based approaches. (2012)
- Annotation of functional variation in personal genomes using RegulomeDB. (2012)
- Pathway analysis of genomic data: concepts, methods, and prospects for future development. (2012)
- Intermediate phenotypes in psychiatric disorders. (2011)
- Gene-environment interaction in psychological traits and disorders. (2011)
- Gene set analysis of genome-wide association studies: methodological issues and perspectives. (2011)
- The neuroscience of suicidal behaviors: what can we expect from endophenotype strategies? (2011)
- Trans-eQTLs reveal that independent genetic variants associated with a complex phenotype converge on intermediate genes, with a major role for the HLA. (2011)
- Genomic regions identified by overlapping clusters of nominally-positive SNPs from genome-wide studies of alcohol and illegal substance dependence. (2011)
- Genetics of psychiatric disorders methods: molecular approaches. (2010)
- Incorporating age at onset of smoking into genetic models for nicotine dependence: evidence for interaction with multiple genes. (2010)
- LocusZoom: regional visualization of genome-wide association scan results. (2010)
- The basics of brain development. (2010)
- i-GSEA4GWAS: a web server for identification of pathways/gene sets associated with traits by applying an improved gene set enrichment analysis to genome-wide association study. (2010)
- SNPinfo: integrating GWAS and candidate gene information into functional SNP selection for genetic association studies. (2009)
- A groupwise association test for rare mutations using a weighted sum statistic. (2009)
- From mouse to man: the 5-HT3 receptor modulates physical dependence on opioid narcotics. (2009)
- Marker selection for genetic case-control association studies. (2009)
- Gene-wide analyses of genome-wide association data sets: evidence for multiple common risk alleles for schizophrenia and bipolar disorder and for overlap in genetic risk. (2009)
- Chromatin immunoprecipitation (ChIP) coupled to detection by quantitative real-time PCR to study transcription factor binding to DNA in Caenorhabditis elegans. (2008)
- FASTSNP: an always up-to-date and extendable service for SNP function analysis and prioritization. (2006)
- Co-occurring risk factors for alcohol dependence and habitual smoking: update on findings from the Collaborative Study on the Genetics of Alcoholism. (2006)
- SNPs3D: candidate gene and SNP selection for association studies. (2006)
- The zebrafish gene map defines ancestral vertebrate chromosomes. (2005)
- Environmental programming of stress responses through DNA methylation: life at the interface between a dynamic environment and a fixed genome. (2005)
Merged raw entities (9)
All extracted name/type variants the normalize job merged into this entity. Use this to spot wrong merges, or aliases that should be split off.
| Raw name | Type | Papers | Mentions |
|---|---|---|---|
| gene | gene | 114 | 169 |
| candidate genetic variants | gene | — | — |
| de gene | gene | — | — |
| gene-based aggregation | gene | — | — |
| gene hugo symbol | gene | — | — |
| individual genes | gene | — | — |
| ncbi entrez gene | gene | — | — |
| tier 1 gene | gene | — | — |
| tier 2 gene | gene | — | — |