reference allele variant
Evidence from:
primary |
all sources
Related entities (4)
| Subject | Relation | Object | p-value | Evidence |
|---|---|---|---|---|
| reference allele | associated_with | outcome | — | 1 |
| reference allele | associated_with | risk factor | — | 1 |
| reference allele | risk_factor_for | unipolar depression | — | 1 |
| samples | associated_with | reference allele | — | 1 |
Mentioned in (13)
Papers in which this entity is mentioned.
- Discovery of regulatory noncoding variants in individual cancer genomes by using cis-X. (2020)
- Ploidy- and Purity-Adjusted Allele-Specific DNA Analysis Using CLONETv2. (2019)
- PASSPORT-seq: A Novel High-Throughput Bioassay to Functionally Test Polymorphisms in Micro-RNA Target Sites. (2018)
- Mapping and phasing of structural variation in patient genomes using nanopore sequencing. (2017)
- Extending the MR-Egger method for multivariable Mendelian randomization to correct for both measured and unmeasured pleiotropy. (2017)
- Eigenanalysis of SNP data with an identity by descent interpretation. (2016)
- GeneiASE: Detection of condition-dependent and static allele-specific expression from RNA-seq data without haplotype information. (2016)
- MBASED: allele-specific expression detection in cancer tissues and cell lines. (2014)
- PolymiRTS Database 3.0: linking polymorphisms in microRNAs and their target sites with human diseases and biological pathways. (2014)
- Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples. (2013)
- VarScan 2: somatic mutation and copy number alteration discovery in cancer by exome sequencing. (2012)
- The neuronal transporter gene SLC6A15 confers risk to major depression. (2011)
- Nucleotide-resolution analysis of structural variants using BreakSeq and a breakpoint library. (2010)
Merged raw entities (2)
All extracted name/type variants the normalize job merged into this entity. Use this to spot wrong merges, or aliases that should be split off.
| Raw name | Type | Papers | Mentions |
|---|---|---|---|
| reference allele | variant | 12 | 12 |
| r | variant | 1 | 1 |