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Chunk #13 — Materials and methods — Statistical analysis

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GABA-A and NMDA receptor subunit mRNA expression is altered in the caudate but not the putamen of the postmortem brains of alcoholics.
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Statistical analysis was carried out using Statistica 11 and data were plotted with GraphPad Prism 6. Data were presented in scatter plots with 95% confidence interval or as box and whisker plots using the Tukey method to determine outliers (data points above or below the whiskers). Statistical analysis was then performed where the outliers were not included when data were compared. Normality of data distribution was analyzed using Shapiro–Wilk normality test (see Table S4 in Supplementary Material). The differences between groups were assessed by One-Way ANOVA with Bonferroni post-hoc test (normally distributed data) or nonparametric Kruskal–Wallis ANOVA on ranks with Dunn's post-hoc test (not normally distributed data). A general stepwise linear regression model was used to identify covariates (age, PMI, RQI, brain pH, smoking history). Variables with a significant association with group (controls and alcoholics) were included in the final statistical model as covariates. A significant level was set to p < 0.05.