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Chunk #13 — Methods — Subjects and samples — Induced pluripotent stem cell (iPSC)-derived neurons

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Genetic variants associated with Alzheimer's disease confer different cerebral cortex cell-type population structure.
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Dermal fibroblasts were obtained from skin biopsies from research participants in the Knight-ADRC (Fibroblast lines: F11362, F12455, and F13504). Human fibroblasts were reprogrammed into iPSCs using non-integrating Sendai virus carrying OCT3/4, SOX2, KLF4, and cMYC [40, 41]. iPSCs were manually selected and expanded on Matrigel in mTesR1 (StemCell Techologies). iPSCs were characterized for expression of pluripotency markers by immunocytochemistry and quantitative polymerase chain reaction (qPCR). qPCR with probes specific to the Sendai virus were used to confirm the absence of virus in the isolated clones. All cell lines were confirmed to have a normal karyotype based on G-band karyotyping. To generate cortical neurons, iPSCs were plated in a v-bottom plate in neural induction media (StemCell Technologies; 65,000 per well) to form highly uniform neural aggregates. After five days, neural aggregates were transferred onto PLO/laminin-coated tissue culture plates. Neural rosettes formed over 5–7 days. The resulting neural rosettes were then isolated by enzymatic selection (StemCell Technologies) and cultured as neural progenitor cells (NPCs). NPCs were then differentiated by culturing in neural maturation medium (neurobasal medium supplemented with B27, GDNF, BDNF, cAMP).