Many previous studies7,8,45,46 have focused on the relationship between CAD and SCZ, whereas the correlation between CAD and MDD has received much less attention. Although depressive disorders are highly comorbid with CAD in clinical settings,47 to our knowledge no previous genomics study has explored CAD-MDD pleiotropy. We found some evidence for genetic correlation between the risks for CAD and MDD. The existence of shared genetic factors for CAD-MDD is supported by the overlap in SNPs nominally associated with both traits, although we found no significant evidence of pleiotropy at any single SNP. We also found limited support for the possibility that such a relationship exists for CAD and SCZ based on relatively strong signals for both traits with variants in CSMD1 (although not the same variants). Nongenetic explanations such as patients with SCZ or MDD mediating the symptoms of these disorders with cannabis use might also explain the comorbidity. These analyses are exploratory, and follow-up studies to validate and extend these findings are necessary.