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Chunk #12 — Materials and Methods — Coexpression Network Construction

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Regional Differences and Similarities in the Brain Transcriptome for Mice Selected for Ethanol Preference From HS-CC Founders.
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We clustered the adjacency matrices utilizing average linkage and the WGCNA cuttreeHybrid function with the following parameters: cutHeight = 0.9995, minClusterSize = 100, and deepSplit = 4. The resulting clusters (denoted as modules) are uniquely identified by arbitrarily chosen colors which are independently generated for each brain region.