paperKB
coga / coga-kb
Help
Sign in

Chunk #13 — Methods — RNA preparation — MSSM/Penn/Pitt cohorts

Source
CommonMind Consortium provides transcriptomic and epigenomic data for Schizophrenia and Bipolar Disorder.
Embedded
yes

Text

RNA Integrity Number (RIN) was determined by fractionating RNA samples on the 6000 Nano chip (Agilent Technologies) on the Agilent 4200 TapeStation. Samples with RIN > =5.5 were included in the sequencing set, resulting in 46 samples with RIN < 5.5 to be excluded from the study. An additional 18 samples were removed post sequencing due to sample genotype variant inconsistencies and low reads resulting in a final dataset of 606 samples.