For psychiatric-immune phenotype-pairs showing significant genetic correlations after BH correction for multiple testing, we used the HESS software to estimate partitioned heritability and genetic correlations based on smaller LD-based segments of the genome (average size = 1.5 Mb). We report the number and identity of genomic partitions (based on HG19 reference) displaying significant local genetic correlations and apply correction for the total number of partitions (≈1694, after MHC removal). Because presently available methods are poorly suited for fine-mapping the loci mediating a genetic correlation, we prioritized reporting correlated loci that also contain genome-wide significant associations for the relevant phenotypes (i.e., associations with p < 5×10−8; subsequently called GW hits). We report GW hits contained within the present datasets, but also cross-reference these findings with those contained in immunobase.org, in order to identify loci associated with multiple immune-related disorders. We report the HGNC symbols for candidate genes proposed to mediate those associations. The full list of genes contained within each correlated loci is provided in Supplementary Table 3. Additionally, we used HESS to examine patterns of local genetic correlation in relationship
