paperKB
coga / coga-kb
Help
Sign in

Chunk #20 — Methods — Warfarin Pharmacogenomics Cohort (WPC)

Source
Development and validation of a trans-ancestry polygenic risk score for type 2 diabetes in diverse populations.
Embedded
yes

Text

The UAB WPC [31] is a prospective cohort of first-time warfarin users aged 19 years or older starting warfarin for anticoagulation. Warfarin therapy requiring a target international normalized ratio (INR) range of 2-3 was initiated in patients with venous thromboembolism, stroke/transient ischemic attacks, atrial fibrillation, myocardial infarction, and/or peripheral arterial disease. Patients requiring a higher intensity (INR 2.5 to 3.5) or lower intensity (INR 1.5 to 2.5) of anticoagulation were excluded. Baseline demographics, as well as medication history and compliance, were obtained. Changes in INR, medications, and laboratory parameters were documented at each clinical visit as reported previously. Genotyping was performed on the Illumina MEGA array and an Illumina 1M duo array for 599 and 297 self-reported Black participants, respectively. Participants aged 40 years or younger were excluded, leaving 655 individuals (Table 1). Imputation was performed using version r2 of the NHLBI TOPMed reference panel. Imputed variants were inspected for their imputation quality scores (R2) and it was noted that more than 99% of the variants with MAF >1% had an imputation quality >0.6. High-quality genotype calls with genotypic probability >0.9 were retained.