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Chunk #43 — Methods — Plasmids

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DALRD3 encodes a protein mutated in epileptic encephalopathy that targets arginine tRNAs for 3-methylcytosine modification.
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For the arginine codon reporter assay, a synthetic gene encoding the NanoLuc luciferase protein fused to an N-terminal run of 10X arginine codons of either AGA, AGG, CGC or CGA was generated by in vitro gene synthesis (GenScript). The synthetic codon reporter gene was subcloned into pcDNA3.1 and sequence verified. The reporter cassette containing the 10xArg codon-NanoLuc was then cloned into the pLJM1-EGFP lentiviral plasmid (Sabatini Lab, Addgene #19319) using NheI-EcoRI to replace the EGFP sequence. The resulting plasmid encodes the luciferase reporter protein expressed from the CMV promoter.