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Chunk #7 — METHODS AND MATERIALS — SNP Quality Control

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Rare copy number variants in tourette syndrome disrupt genes in histaminergic pathways and overlap with autism.
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Genotypes were analyzed using Plink (52) and removed from the analyses if: 1) sample call rate was less than 97%; 2) genotypes were inconsistent with recorded gender; or 3) Mendelian inconsistencies or cryptic relatedness were detected (see Methods in Supplement 1).