A comparison of normalization methods for high density oligonucleotide array data based on variance and bias.
paper
Cited
Public
Unavailable
- Authors
- Bolstad, B M; Irizarry, R A; Astrand, M; Speed, T P
- Year
- 2003
- Journal
- Bioinformatics (Oxford, England)
- PMID
- 12538238
- DOI
- 10.1093/bioinformatics/19.2.185
MOTIVATION: When running experiments that involve multiple high density oligonucleotide arrays, it is important to remove sources of variation between arrays of non-biological origin. Normalization is a process for reducing this variation. It is common to see non-linear relations between arrays and the standard normalization provided by Affymetrix does not perform well in these situations. RESULTS: We present three methods of performing normalization at the probe intensity level. These methods are called complete data methods because they make use of data from all arrays in an experiment to form the normalizing relation. These algorithms are compared to two methods that make use of a baseline array: a one number scaling based algorithm and a method that uses a non-linear normalizing relation by comparing the variability and bias of an expression measure. Two publicly available datasets are used to carry out the comparisons. The simplest and quickest complete data method is found to perform favorably. AVAILABILITY: Software implementing all three of the complete data normalization methods is available as part of the R package Affy, which is a part of the Bioconductor project http://www.bioconductor.org. SUPPLEMENTARY INFORMATION: Additional figures may be found at http://www.stat.berkeley.edu/~bolstad/normalize/index.html
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| <i>LRP1</i> Repression by SNAIL Results in ECM Remodeling in Genetic Risk for Vascular Diseases. | Liu L et al. | — | 2024 | → |
| Impaired metal perception and regulation of associated human foliate papillae tongue transcriptome in long-COVID-19. | Danzer B et al. | — | 2024 | → |
| Increased ROS levels in mitochondrial outer membrane protein Mul1-deficient oocytes result in abnormal preimplantation embryogenesis. | Nakai A et al. | — | 2024 | → |
| Independent transcriptional patterns reveal biological processes associated with disease-free survival in early colorectal cancer. | Knapen DG et al. | — | 2024 | → |
| In-Silico Identification of Novel Pharmacological Synergisms: The Trabectedin Case. | Mannarino L et al. | — | 2024 | → |
| Integrated analysis of blood DNA methylation, genetic variants, circulating proteins, microRNAs, and kidney failure in type 1 diabetes. | Chen Z et al. | — | 2024 | → |
| Integrated bioinformatics analysis for identifying fibroblast-associated biomarkers and molecular subtypes in human membranous nephropathy. | Gui C et al. | — | 2024 | → |
| Integrated proteomic and glycoproteomic analysis reveals heterogeneity and molecular signatures of brain metastases from lung adenocarcinomas. | Zhao Y et al. | — | 2024 | → |
| Integrated systems biology analysis of acute lymphoblastic leukemia: unveiling molecular signatures and drug repurposing opportunities. | Budak B et al. | — | 2024 | → |
| Integrative informatics analysis identifies that ginsenoside Re improves renal fibrosis through regulation of autophagy. | Liu Y et al. | — | 2024 | → |
| JMnorm: a novel joint multi-feature normalization method for integrative and comparative epigenomics. | Xiang G et al. | — | 2024 | → |
| Label-Free Quantitation of Endogenous Peptides. | Abid MSR et al. | — | 2024 | → |
| Long Non-Coding RNAs and Alzheimer's Disease: Towards Personalized Diagnosis. | Mosquera-Heredia MI et al. | — | 2024 | → |
| Low molecular weight acids differentially impact Fusarium verticillioides transcription. | Brown DW et al. | — | 2024 | → |
| Mannose-6-Phosphate Isomerase Functional Status Shapes a Rearrangement in the Proteome and Degradome of Mannose-Treated Melanoma Cells. | de Vasconcellos Racorti N et al. | — | 2024 | → |
| Mature IL-36γ Induces Stratum Corneum Exfoliation in Generalized Pustular Psoriasis by Suppressing Corneodesmosin. | Sato E et al. | — | 2024 | → |
| Metabolic self-feeding in HBV-associated hepatocarcinoma centered on feedback between circulation lipids and the cellular MAPK/mTOR axis. | Zhu Y et al. | — | 2024 | → |
| Microarray and Functional Pathway Analyses Revealed Significantly Elevated Gene Expressions Associated with Metabolic Resistance to Oxamyl (Vydate) in <i>Lygus lineolaris</i>. | Zhu YC et al. | — | 2024 | → |
| Mitochondrial complex I activity in microglia sustains neuroinflammation. | Peruzzotti-Jametti L et al. | — | 2024 | → |
| Molecular underpinnings of programming by early-life stress and the protective effects of early dietary ω6/ω3 ratio, basally and in response to LPS: Integrated mRNA-miRNAs approach. | Reemst K et al. | — | 2024 | → |
| Multi-omics and pathway analyses of genome-wide associations implicate regulation and immunity in verbal declarative memory performance. | Mei H et al. | — | 2024 | → |
| Multiomics of early epileptogenesis in mice reveals phosphorylation and dephosphorylation-directed growth and synaptic weakening. | Hurtado Silva M et al. | — | 2024 | → |
| Multiomics profiling of DNA methylation, microRNA, and mRNA in skeletal muscle from monozygotic twin pairs discordant for type 2 diabetes identifies dysregulated genes controlling metabolism. | Ling C et al. | — | 2024 | → |
| Multiomics Studies on Metabolism Changes in Alcohol-Associated Liver Disease. | He L et al. | — | 2024 | → |
| Multi-tissue metabolic and transcriptomic responses to a short-term heat stress in swine. | Huau G et al. | — | 2024 | → |
| Mutual information for detecting multi-class biomarkers when integrating multiple bulk or single-cell transcriptomic studies. | Zou J et al. | — | 2024 | → |
| Neurodegenerative pathways and metabolic changes in the hippocampus and cortex of mice exposed to urban particulate matter: Insights from an integrated interactome analysis. | Kim BY et al. | — | 2024 | → |
| Nitrogen mustard induces dynamic nuclear protein spectrum change and DNA-protein crosslinking, with p97 mediating repair. | Cheng J et al. | — | 2024 | → |
| Normalization methods in mass spectrometry-based analytical proteomics: A case study based on renal cell carcinoma datasets. | Carvalho LB et al. | — | 2024 | → |
| Normalization of gene counts affects principal components-based exploratory analysis of RNA-sequencing data. | van Lingen HJ et al. | — | 2024 | → |
| Optimization of headspace high-capacity tool coupled to two-dimensional gas chromatography-mass spectrometry for mapping the volatile organic compounds of raw pistachios. A proof-of-concept on the classification ability by geographic origin. | Schincaglia A et al. | — | 2024 | → |
| Phytohormonal regulation determines the organization pattern of shoot aerenchyma in greater duckweed (Spirodela polyrhiza). | Kim M et al. | — | 2024 | → |
| Phytohormones and related genes function as physiological and molecular switches regulating water stress response in the sunflower. | Andrade A et al. | — | 2024 | → |
| Preanalytical considerations in quantifying circulating miRNAs that predict end-stage kidney disease in diabetes. | Satake E et al. | — | 2024 | → |
| Prediction of concrete compressive strength using a Deepforest-based model. | Zhang W et al. | — | 2024 | → |
| Prediction of metabolites associated with somatic mutations in cancers by using genome-scale metabolic models and mutation data. | Lee G et al. | — | 2024 | → |
| Pretreating and normalizing metabolomics data for statistical analysis. | Sun J et al. | — | 2024 | → |
| Proinflammatory cytokines driving cardiotoxicity in COVID-19. | Colzani M et al. | — | 2024 | → |
| Proteome Profiling of Experimental Autoimmune Encephalomyelitis Mouse Model and the Effect of a SUMO E1 Inhibitor. | Du Y et al. | — | 2024 | → |
| Proteomic analysis shows decreased type I fibers and ectopic fat accumulation in skeletal muscle from women with PCOS. | Stener-Victorin E et al. | — | 2024 | → |
| Proteomic Profiling of Endothelial Cells Exposed to Mitomycin C: Key Proteins and Pathways Underlying Genotoxic Stress-Induced Endothelial Dysfunction. | Sinitsky M et al. | — | 2024 | → |
| Quantitative transcriptomic and epigenomic data analysis: a primer. | Coussement L et al. | — | 2024 | → |
| RCPA: An Open-Source R Package for Data Processing, Differential Analysis, Consensus Pathway Analysis, and Visualization. | Nguyen H et al. | — | 2024 | → |
| Remodeling of the Cardiac Extracellular Matrix Proteome During Chronological and Pathological Aging. | Santinha D et al. | — | 2024 | → |
| Risk score model to automatically detect prostate cancer patients by integrating diagnostic parameters. | Castaldo R et al. | — | 2024 | → |
| RNA Expression of MMP12 Is Strongly Associated with Inflammatory Bowel Disease and Is Regulated by Metabolic Pathways in RAW 264.7 Macrophages. | Arosa L et al. | — | 2024 | → |
| Single-cell RNA sequencing identifies senescence as therapeutic target in rhabdomyolysis-induced acute kidney injury. | Rao SN et al. | — | 2024 | → |
| Stage II oesophageal carcinoma: peril in disguise associated with cellular reprogramming and oncogenesis regulated by pseudogenes. | Pravallika G et al. | — | 2024 | → |
| Survival prediction landscape: an in-depth systematic literature review on activities, methods, tools, diseases, and databases. | Abbasi AF et al. | — | 2024 | → |
| Systematic data analysis pipeline for quantitative morphological cell phenotyping. | Ghanegolmohammadi F et al. | — | 2024 | → |
| Systems approach for congruence and selection of cancer models towards precision medicine. | Zou J et al. | — | 2024 | → |
| Systems genetics analysis reveals the common genetic basis for pain sensitivity and cognitive function. | Xu F et al. | — | 2024 | → |
| The Identification of RPL4 as a Hub Gene Associated with Goat Litter Size via Weighted Gene Co-Expression Network Analysis. | Zhang Z et al. | — | 2024 | → |
| TheMarker: a comprehensive database of therapeutic biomarkers. | Zhang Y et al. | — | 2024 | → |
| The post-stroke young adult brain has limited capacity to re-express the gene expression patterns seen during early postnatal brain development. | Ruscu M et al. | — | 2024 | → |
| Time-series analysis of hematopoietic stem cells. | Han J et al. | — | 2024 | → |
| Tirzepatide modulates the regulation of adipocyte nutrient metabolism through long-acting activation of the GIP receptor. | Regmi A et al. | — | 2024 | → |
| Tissue-specific RNA methylation prediction from gene expression data using sparse regression models. | Jiang J et al. | — | 2024 | → |
| Tissue-specific sex differences in pediatric and adult immune cell composition and function. | Mitul MT et al. | — | 2024 | → |
| Transcriptional response of <i>Methanosarcina acetivorans</i> to repression of the energy-conserving methanophenazine: CoM-CoB heterodisulfide reductase enzyme HdrED. | Buan NR et al. | — | 2024 | → |
| Transkingdom Network Analysis (TkNA): a systems framework for inferring causal factors underlying host-microbiota and other multi-omic interactions. | Newman NK et al. | — | 2024 | → |
| Txnrd1 as a prognosticator for recurrence, metastasis and response to neoadjuvant chemotherapy and radiotherapy in breast cancer patients. | Patwardhan RS et al. | — | 2024 | → |
| Type 1 interferons and Foxo1 down-regulation play a key role in age-related T-cell exhaustion in mice. | Durand A et al. | — | 2024 | → |
| Unveiling the genetic link and pathogenesis between psoriasis and IgA nephropathy based on Mendelian randomization and transcriptome data analyses. | Chen Y et al. | — | 2024 | → |
| Validation of a genome-based model for adjusting radiotherapy dose (GARD) in patients with locally advanced rectal cancer. | Xia H et al. | — | 2024 | → |
| VARIDT 3.0: the phenotypic and regulatory variability of drug transporter. | Yin J et al. | — | 2024 | → |
| Vascular Endothelial Growth Factor a Promotes Chronic Itch via VEGFA-VEGFR2-PI3K-TRPV1 Axis in Allergic Contact Dermatitis. | Liu QY et al. | — | 2024 | → |
| Adjustment of <i>p</i>-value expression to ontology using machine learning for genetic prediction, prioritization, interaction, and its validation in glomerular disease. | Ettetuani B et al. | — | 2023 | → |
| A dynamic actin cytoskeleton is required to prevent constitutive VDAC-dependent MAPK signalling and aberrant lipid homeostasis. | Davis J et al. | — | 2023 | → |
| A multi-platform normalization method for meta-analysis of gene expression data. | Tihagam RD et al. | — | 2023 | → |
| Analysis of cells of epithelial, connective tissue and immune differentiation in HPV-positive-, HPV-negative oropharyngeal carcinoma and normal oropharyngeal tissue by immunofluorescence multiplex image cytometry: a preliminary report. | Giotakis AI et al. | — | 2023 | → |
| Analysis of ceRNA Regulatory Mechanism of Rape Pollen Allergy Based on Whole-Transcriptome Sequencing of Peripheral Blood Mononuclear Cells. | Wang Y et al. | — | 2023 | → |
| A novel prostate cancer subtyping classifier based on luminal and basal phenotypes. | Weiner AB et al. | — | 2023 | → |
| Application of the adverse outcome pathway concept for investigating developmental neurotoxicity potential of Chinese herbal medicines by using human neural progenitor cells in vitro. | Klose J et al. | — | 2023 | → |
| Artificial Intelligence on Diagnostic Aid of Leprosy: A Systematic Literature Review. | Fernandes JRN et al. | — | 2023 | → |
| Assessment of Intestinal Permeability and Inflammation Bio-Markers in Patients with Rheumatoid Arthritis. | Heidt C et al. | — | 2023 | → |
| A study of differential microRNA expression profile in migraine: the microMIG exploratory study. | Gallardo VJ et al. | — | 2023 | → |
| A study on the association of placental and maternal urinary phthalate metabolites. | Liang HW et al. | — | 2023 | → |
| A systematic evaluation of normalization methods and probe replicability using infinium EPIC methylation data. | Welsh H et al. | — | 2023 | → |
| A systematic exploration of ginsenoside Rg5 reveals anti-inflammatory functions in airway mucosa cells. | Heo H et al. | — | 2023 | → |
| BatMan: Mitigating Batch Effects Via Stratification for Survival Outcome Prediction. | Ni A et al. | — | 2023 | → |
| Bioinformatics Analysis of the Molecular Networks Associated with the Amelioration of Aberrant Gene Expression by a Tyr-Trp Dipeptide in Brains Treated with the Amyloid-β Peptide. | Hamano M et al. | — | 2023 | → |
| Bioinformatics and <i>in vitro</i> study reveal the roles of microRNA-346 in high glucose-induced human retinal pigment epithelial cell damage. | Li P et al. | — | 2023 | → |
| Bioinformatics and system biology analysis revealed the crosstalk between COVID-19 and osteoarthritis. | Lai B et al. | — | 2023 | → |
| Brain Metabolomics in Fragile X-Associated Tremor/Ataxia Syndrome (FXTAS). | Salcedo-Arellano MJ et al. | — | 2023 | → |
| bulkAnalyseR: an accessible, interactive pipeline for analysing and sharing bulk multi-modal sequencing data. | Moutsopoulos I et al. | — | 2023 | → |
| Bulk and Single-Cell RNA-Seq Analyses for Studies of Spermatogonia. | Singh A et al. | — | 2023 | → |
| CAR Protects Females from Diet-Induced Steatosis and Associated Metabolic Disorders. | Oliviero F et al. | — | 2023 | → |
| C. elegans molting requires rhythmic accumulation of the Grainyhead/LSF transcription factor GRH-1. | Meeuse MWM et al. | — | 2023 | → |
| Characterization of triple negative breast cancer gene expression profiles in Mexican patients. | Ortiz Valdez E et al. | — | 2023 | → |
| Circular RNA Expression Profiling by Microarray-A Technical and Practical Perspective. | Shi Y et al. | — | 2023 | → |
| Colonic TRPV4 overexpression is related to constipation severity. | Mihara H et al. | — | 2023 | → |
| Comprehensive analysis of the RNA transcriptome expression profiles and construction of the ceRNA network in heart failure patients with sacubitril/valsartan therapeutic heterogeneity after acute myocardial infarction. | Su J et al. | — | 2023 | → |
| Comprehensive transcriptomic analysis of long non-coding RNAs in bovine ovarian follicles and early embryos. | Wang P et al. | — | 2023 | → |
| Cross-platform normalization enables machine learning model training on microarray and RNA-seq data simultaneously. | Foltz SM et al. | — | 2023 | → |
| Crush Injury and Simulated Flight Effects on Muscle Gene Expression in Female Mice. | Schneider BS et al. | — | 2023 | → |
| Cryotop vitrification of large batches of pig embryos simultaneously provides excellent postwarming survival rates and minimal interference with gene expression. | Gonzalez-Plaza A et al. | — | 2023 | → |
| Data-driven analysis and druggability assessment methods to accelerate the identification of novel cancer targets. | Beis G et al. | — | 2023 | → |
| DDM1-mediated gene body DNA methylation is associated with inducible activation of defense-related genes in Arabidopsis. | Lee S et al. | — | 2023 | → |
| Demystifying the impact of prenatal tobacco exposure on the placental immune microenvironment: Avoiding the tragedy of mending the fold after death. | Zhao X et al. | — | 2023 | → |
| Detect Cytochrome C Oxidase- and Glutathione-S-Transferase-Mediated Detoxification in a Permethrin-Resistant Population of <i>Lygus lineolaris</i>. | Zhu YC et al. | — | 2023 | → |
| Determination of in vitro hepatotoxic potencies of a series of perfluoroalkyl substances (PFASs) based on gene expression changes in HepaRG liver cells. | Louisse J et al. | — | 2023 | → |
| Differences in Brain Network Topology Based on Alcohol Use History in Adolescents. | Kirse HA et al. | — | 2023 | → |
| Differential adenine methylation analysis reveals increased variability in 6mA in the absence of methyl-directed mismatch repair. | Stone CJ et al. | — | 2023 | → |
| Differential co-expression network analysis elucidated genes associated with sensitivity to farnesyltransferase inhibitor and prognosis of acute myeloid leukemia. | Kelesoglu N et al. | — | 2023 | → |
| Differential plasma protein expression after ingestion of essential amino acid-based dietary supplement verses whey protein in low physical functioning older adults. | Azhar G et al. | — | 2023 | → |
| Differential ultracentrifugation enables deep plasma proteomics through enrichment of extracellular vesicles. | Kverneland AH et al. | — | 2023 | → |
| Digital spatial profiling of intraductal papillary mucinous neoplasms: Toward a molecular framework for risk stratification. | Iyer MK et al. | — | 2023 | → |
| Distinct DNA methylation signatures associated with blood lipids as exposures or outcomes among survivors of childhood cancer: a report from the St. Jude lifetime cohort. | Dong Q et al. | — | 2023 | → |
| Distinguishing features of long COVID identified through immune profiling. | Klein J et al. | — | 2023 | → |
| Drug repositioning <i>via</i> host-pathogen protein-protein interactions for the treatment of cervical cancer. | Kori M et al. | — | 2023 | → |
| Drug Repurposing Analysis for Colorectal Cancer through Network Medicine Framework: Novel Candidate Drugs and Small Molecules. | Unal U et al. | — | 2023 | → |
| Drug-target identification in COVID-19 disease mechanisms using computational systems biology approaches. | Niarakis A et al. | — | 2023 | → |
| Dual specificity and target gene selection by the MADS-domain protein FRUITFULL. | van Mourik H et al. | — | 2023 | → |
| Effects of sustained hyperprolactinemia in late gestation on the mammary parenchymal tissue transcriptome of gilts. | Palin MF et al. | — | 2023 | → |
| Endothelial DLL4 Is an Adipose Depot-Specific Fasting Sensor Regulating Fatty Acid Fluxes. | Aupetit A et al. | — | 2023 | → |
| Ephrin-B1 regulates the adult diastolic function through a late postnatal maturation of cardiomyocyte surface crests. | Karsenty C et al. | — | 2023 | → |
| ETV2 primes hematoendothelial gene enhancers prior to hematoendothelial fate commitment. | Steimle JD et al. | — | 2023 | → |
| Evaluation of Quantification and Normalization Strategies for Phosphoprotein Phosphatase Affinity Proteomics: Application to Breast Cancer Signaling. | Brauer BL et al. | — | 2023 | → |
| Evolutionary analysis of conserved non-coding elements subsequent to whole-genome duplication in opium poppy. | Xu Y et al. | — | 2023 | → |
| Exploring the Regulation and Function of <i>Rpl3l</i> in the Development of Early-Onset Dilated Cardiomyopathy and Congestive Heart Failure Using Systems Genetics Approach. | Bajpai AK et al. | — | 2023 | → |
| Ferroptosis-related genes are involved in asthma and regulate the immune microenvironment. | Wang H et al. | — | 2023 | → |
| FOXM1-Mediated Regulation of Reactive Oxygen Species and Radioresistance in Oral Squamous Cell Carcinoma Cells. | Takeshita H et al. | — | 2023 | → |
| Gene expression alterations in the postmortem hippocampus from older patients with bipolar disorder - A hypothesis generating study. | Nascimento C et al. | — | 2023 | → |
| Gene network based analysis identifies a coexpression module involved in regulating plasma lipids with high-fat diet response. | Xu F et al. | — | 2023 | → |
| Gene regulatory network inference using mixed-norms regularized multivariate model with covariance selection. | Mbebi AJ et al. | — | 2023 | → |
| Genetic subtype-guided immunochemotherapy in diffuse large B cell lymphoma: The randomized GUIDANCE-01 trial. | Zhang MC et al. | — | 2023 | → |
| Genetic variation in chromatin state across multiple tissues in Drosophila melanogaster. | Huynh K et al. | — | 2023 | → |
| Genomic, Transcriptomic, and Proteomic Depiction of Induced Pluripotent Stem Cells-Derived Smooth Muscle Cells As Emerging Cellular Models for Arterial Diseases. | Liu L et al. | — | 2023 | → |
| Golgi-apparatus genes related signature for predicting the progression-free interval of patients with papillary thyroid carcinoma. | Liu R et al. | — | 2023 | → |
| Hepatic ribosomal protein S6 (Rps6) insufficiency results in failed bile duct development and loss of hepatocyte viability; a ribosomopathy-like phenotype that is partially p53-dependent. | Comerford SA et al. | — | 2023 | → |
| Hepatocyte SREBP signaling mediates clock communication within the liver. | Guan D et al. | — | 2023 | → |
| High-fat diet and obesity are associated with differential angiogenic gene expression in epithelial ovarian cancer. | Baumann KE et al. | — | 2023 | → |
| High-throughput metabolomics for the design and validation of a diauxic shift model. | Brunnsåker D et al. | — | 2023 | → |
| Human cytomegalovirus infection perturbs neural progenitor cell fate via the expression of viral microRNAs. | Jiang X et al. | — | 2023 | → |
| Identification and Characterization of Development-Related microRNAs in the Red Flour Beetle, <i>Tribolium castaneum</i>. | Li C et al. | — | 2023 | → |
| Identifying Immune Cell Infiltration and Hub Genes During the Myocardial Remodeling Process After Myocardial Infarction. | Tian Y et al. | — | 2023 | → |
| Identifying prognostic biomarker related to immune infiltration in acute myeloid leukemia. | Lu W et al. | — | 2023 | → |
| <i>In silico</i> prediction and biological assessment of novel angiogenesis modulators from traditional Chinese medicine. | Zhu Y et al. | — | 2023 | → |
| Inference of transcriptome signatures of Escherichia coli in long-term stationary phase. | Takano S et al. | — | 2023 | → |
| Influenza vaccine format mediates distinct cellular and antibody responses in human immune organoids. | Kastenschmidt JM et al. | — | 2023 | → |
| Integrated analyses delineate distinctive immunological pathways and diagnostic signatures for Behcet's disease by leveraging gene microarray data. | Zhan H et al. | — | 2023 | → |
| Integrated Analysis of lncRNA-miRNA-mRNA Regulatory Network in Rapamycin-Induced Cardioprotection against Ischemia/Reperfusion Injury in Diabetic Rabbits. | Samidurai A et al. | — | 2023 | → |
| Integrating Omics Data in Genome-Scale Metabolic Modeling: A Methodological Perspective for Precision Medicine. | Sen P et al. | — | 2023 | → |
| Integration of circulating microRNAs and transcriptome signatures identifies early-pregnancy biomarkers of preeclampsia. | Mirzakhani H et al. | — | 2023 | → |
| Integration of Single-Cell RNA-Seq Datasets: A Review of Computational Methods. | Ryu Y et al. | — | 2023 | → |
| Integrative gene expression analysis for the diagnosis of Parkinson's disease using machine learning and explainable AI. | Bhandari N et al. | — | 2023 | → |
| Integrative mapping of the dog epigenome: Reference annotation for comparative intertissue and cross-species studies. | Son KH et al. | — | 2023 | → |
| Integrative processing of untargeted metabolomic and lipidomic data using MultiABLER. | Lee ICH et al. | — | 2023 | → |
| Integrative systems biology analysis of barley transcriptome ─ hormonal signaling against biotic stress. | Soltani Z et al. | — | 2023 | → |
| <i>prolfqua</i>: A Comprehensive <i>R</i>-Package for Proteomics Differential Expression Analysis. | Wolski WE et al. | — | 2023 | → |
| Large-scale assessment of pros and cons of autopsy-derived or tumor-matched tissues as the norms for gene expression analysis in cancers. | Sorokin M et al. | — | 2023 | → |
| Longitudinal in vivo metabolic labeling reveals tissue-specific mitochondrial proteome turnover rates and proteins selectively altered by parkin deficiency. | Stauch KL et al. | — | 2023 | → |
| Long noncoding RNA study: Genome-wide approaches. | Tao S et al. | — | 2023 | → |
| LYVE-1<sup>+</sup> macrophages form a collaborative CCR5-dependent perivascular niche that influences chemotherapy responses in murine breast cancer. | Anstee JE et al. | — | 2023 | → |
| Mathematical and Machine Learning Approaches for Classification of Protein Secondary Structure Elements from <i>Cα</i> Coordinates. | Sekmen A et al. | — | 2023 | → |
| Methodology to identify a gene expression signature by merging microarray datasets. | Fajarda O et al. | — | 2023 | → |
| MicroRNA expression associated with low-grade cervical intraepithelial neoplasia outcomes. | Winters AN et al. | — | 2023 | → |
| Molecular Mechanisms for the Carnosine-Induced Activation of Muscle-Brain Interaction. | Ishibashi A et al. | — | 2023 | → |
| Mucins 3A and 3B Are Expressed in the Epithelium of Human Large Airway. | Merikallio H et al. | — | 2023 | → |
| Multilevel proteomic analyses reveal molecular diversity between diffuse-type and intestinal-type gastric cancer. | Shi W et al. | — | 2023 | → |
| Network medicine approaches for identification of novel prognostic systems biomarkers and drug candidates for papillary thyroid carcinoma. | Kori M et al. | — | 2023 | → |
| Non-canonical functions of SNAIL drive context-specific cancer progression. | Paul MC et al. | — | 2023 | → |
| NORMSEQ: a tool for evaluation, selection and visualization of RNA-Seq normalization methods. | Scheepbouwer C et al. | — | 2023 | → |
| Oleic acid-bound FABP7 drives glioma cell proliferation through regulation of nuclear lipid droplet formation. | Umaru BA et al. | — | 2023 | → |
| On data normalization and batch-effect correction for tumor subtyping with microRNA data. | Wu Y et al. | — | 2023 | → |
| Open ocean and coastal strains of the N2-fixing cyanobacterium UCYN-A have distinct transcriptomes. | Muñoz-Marín MDC et al. | — | 2023 | → |
| Outlining cardiac ion channel protein interactors and their signature in the human electrocardiogram. | Maurya S et al. | — | 2023 | → |
| Over-expression of miR-3584-5p Represses Nav1.8 Channel Aggravating Neuropathic Pain caused by Chronic Constriction Injury. | Yang R et al. | — | 2023 | → |
| Overnight Corticosterone and Gene Expression in Mouse Hippocampus: Time Course during Resting Period. | Jaszczyk A et al. | — | 2023 | → |
| Pan-cancer molecular subtypes of metastasis reveal distinct and evolving transcriptional programs. | Zhang Y et al. | — | 2023 | → |
| Parallel molecular alteration between Alzheimer's disease and major depressive disorder in the human brain dorsolateral prefrontal cortex: an insight from gene expression and methylation profile analyses. | Rastad S et al. | — | 2023 | → |
| PCSK9, a novel immune and ferroptosis related gene in abdominal aortic aneurysm neck. | Zhuang J et al. | — | 2023 | → |
| Pegylated interferon therapy-related microRNA-6126 downregulates sodium taurocholate cotransporting polypeptide expression in hepatocytes. | Fujita K et al. | — | 2023 | → |
| Point process models for COVID-19 cases and deaths. | Gajardo Á et al. | — | 2023 | → |
| Prevalence of IRF4 rearrangement in large B-cell lymphomas of the Waldeyer's ring in adults. | Streich S et al. | — | 2023 | → |
| Proscillaridin A inhibits lung cancer cell growth and motility through downregulation of the EGFR-Src-associated pathway. | Tsai JY et al. | — | 2023 | → |
| Proteomic analysis of the mouse sperm acrosome - towards an understanding of an organelle with diverse functionality. | Otčenášková T et al. | — | 2023 | → |
| Proteomics to Identify New Blood Biomarkers for Diagnosing Patients With Acute Stroke. | Marto JP et al. | — | 2023 | → |
| Proximity proteomics reveals role of Abelson interactor 1 in the regulation of TAK1/RIPK1 signaling. | Petersen M et al. | — | 2023 | → |
| Radiogenomic association of deep MR imaging features with genomic profiles and clinical characteristics in breast cancer. | Liu Q et al. | — | 2023 | → |
| Rapid Profiling of Protein Complex Reorganization in Perturbed Systems. | Bludau I et al. | — | 2023 | → |
| SARS-CoV-2 Covid-19 Infection During Pregnancy and Differential DNA Methylation in Human Cord Blood Cells From Term Neonates. | Urday P et al. | — | 2023 | → |
| scMoMaT jointly performs single cell mosaic integration and multi-modal bio-marker detection. | Zhang Z et al. | — | 2023 | → |
| Serial and multi-level proteome analysis for microscale protein samples. | Huang D et al. | — | 2023 | → |
| Statistical analysis of high-dimensional biomedical data: a gentle introduction to analytical goals, common approaches and challenges. | Rahnenführer J et al. | — | 2023 | → |
| Statistical normalization methods in microbiome data with application to microbiome cancer research. | Xia Y | — | 2023 | → |
| Sublethal necroptosis signaling promotes inflammation and liver cancer. | Vucur M et al. | — | 2023 | → |
| Symbiosis preservation: Putative regulation of fatty acyl-CoA reductase by miR-31a within the symbiont harboring bacteriome through tsetse evolution. | Lee MH et al. | — | 2023 | → |
| The Angiogenesis Inhibitor Isthmin-1 (ISM1) Is Overexpressed in Experimental Models of Glomerulopathy and Impairs the Viability of Podocytes. | Sahiri V et al. | — | 2023 | → |
| The brain reacting to COVID-19: analysis of the cerebrospinal fluid proteome, RNA and inflammation. | Reinhold D et al. | — | 2023 | → |
| The C-SHIFT Algorithm for Normalizing Covariances. | Chunikhina E et al. | — | 2023 | → |
| The interplay between dietary fatty acids and gut microbiota influences host metabolism and hepatic steatosis. | Schoeler M et al. | — | 2023 | → |
| The Introduction of Detergents in Thermal Proteome Profiling Requires Lowering the Applied Temperatures for Efficient Target Protein Identification. | Ye Y et al. | — | 2023 | → |
| The Role of Hedgehog Signaling in the Melanoma Tumor Bone Microenvironment. | Shamsoon K et al. | — | 2023 | → |
| The role of WRKY transcription factors, FaWRKY29 and FaWRKY64, for regulating Botrytis fruit rot resistance in strawberry (Fragaria × ananassa Duch.). | Lee MB et al. | — | 2023 | → |
| The Use of a Brief Synchronization Treatment after Weaning, Combined with Superovulation, Has Moderate Effects on the Gene Expression of Surviving Pig Blastocysts. | Gonzalez-Ramiro H et al. | — | 2023 | → |
| Transcriptional profiling of a fungal granuloma reveals a low metabolic activity of <i>Paracoccidioides brasiliensis</i> yeasts and an actively regulated host immune response. | Borges BM et al. | — | 2023 | → |
| Transcriptional profiling of canine osteosarcoma identifies prognostic gene expression signatures with translational value for humans. | Mannheimer JD et al. | — | 2023 | → |
| Transcriptomic analysis reveals the gene regulatory networks involved in leaf and root response to osmotic stress in tomato. | Pirona R et al. | — | 2023 | → |
| Transcriptomic analysis reveals the rareness of genetic assimilation of gene expression in environmental adaptations. | Chen P et al. | — | 2023 | → |
| Transcriptomics for Clinical and Experimental Biology Research: Hang on a Seq. | Stokes T et al. | — | 2023 | → |
| Transcriptomic signature related to poor welfare of sport horses. | Foury A et al. | — | 2023 | → |
| Transient increase in atherosclerotic plaque macrophage content following <i>Streptococcus pneumoniae</i> pneumonia in ApoE-deficient mice. | Bazaz R et al. | — | 2023 | → |
| Uniformly shaped harmonization combines human transcriptomic data from different platforms while retaining their biological properties and differential gene expression patterns. | Borisov N et al. | — | 2023 | → |
| Unique ligand and kinase-independent roles of the insulin receptor in regulation of cell cycle, senescence and apoptosis. | Nagao H et al. | — | 2023 | → |
| Using ExpressAnalyst for Comprehensive Gene Expression Analysis in Model and Non-Model Organisms. | Ewald J et al. | — | 2023 | → |
| ViLoN-a multi-layer network approach to data integration demonstrated for patient stratification. | Kańduła MM et al. | — | 2023 | → |
| ABCG2, CD44 and SOX9 are increased with the acquisition of drug resistance and involved in cancer stem cell activities in head and neck squamous cell carcinoma cells. | Murakami K et al. | — | 2022 | → |
| Accounting for multiple imputation-induced variability for differential analysis in mass spectrometry-based label-free quantitative proteomics. | Chion M et al. | — | 2022 | → |
| A Complex Radiomic Signature in Luminal Breast Cancer from a Weighted Statistical Framework: A Pilot Study. | Castaldo R et al. | — | 2022 | → |
| A comprehensive survey on computational learning methods for analysis of gene expression data. | Bhandari N et al. | — | 2022 | → |
| A comprehensive transcriptomic comparison of hepatocyte model systems improves selection of models for experimental use. | Ardisasmita AI et al. | — | 2022 | → |
| Acute exercise rapidly activates hepatic mitophagic flux. | McCoin CS et al. | — | 2022 | → |
| Acute Myeloid Leukemia: New Multiomics Molecular Signatures and Implications for Systems Medicine Diagnostics and Therapeutics Innovation. | Kelesoglu N et al. | — | 2022 | → |
| Addressing the mean-correlation relationship in co-expression analysis. | Wang Y et al. | — | 2022 | → |
| A decreased expression of interferon stimulated genes in peri-implantation endometrium of embryo transfer recipient sows could contribute to embryo death. | Martinez CA et al. | — | 2022 | → |
| A Framework of Analysis to Facilitate the Harmonization of Multicenter Radiomic Features in Prostate Cancer. | Castaldo R et al. | — | 2022 | → |
| Age-Related Differences in Structure and Function of Nasal Epithelial Cultures From Healthy Children and Elderly People. | Balázs A et al. | — | 2022 | → |
| Age-related functional decline of human B cells. | Fujiki T et al. | — | 2022 | → |
| A high-generalizability machine learning framework for predicting the progression of Alzheimer's disease using limited data. | Wang C et al. | — | 2022 | → |
| A multivariate statistical test for differential expression analysis. | Tumminello M et al. | — | 2022 | → |
| An investigation of how normalisation and local modelling techniques confound machine learning performance in a mental health study. | Zhang X et al. | — | 2022 | → |
| Approaches in Gene Coexpression Analysis in Eukaryotes. | Zogopoulos VL et al. | — | 2022 | → |
| A pre-processing pipeline to quantify, visualize, and reduce technical variation in protein microarray studies. | Bérubé S et al. | — | 2022 | → |
| A regeneration-triggered metabolic adaptation is necessary for cell identity transitions and cell cycle re-entry to support blastema formation and bone regeneration. | Brandão AS et al. | — | 2022 | → |
| A review of bioinformatics tools and web servers in different microarray platforms used in cancer research. | Hephzibah Cathryn R et al. | — | 2022 | → |
| A risk model of gene signatures for predicting platinum response and survival in ovarian cancer. | Chen S et al. | — | 2022 | → |
| Assessing normalization methods in mass spectrometry-based proteome profiling of clinical samples. | Dubois E et al. | — | 2022 | → |
| A sugarcane smut fungus effector simulates the host endogenous elicitor peptide to suppress plant immunity. | Ling H et al. | — | 2022 | → |
| Asymmetric Predictive Relationships Across Histone Modifications. | Li H et al. | — | 2022 | → |
| A systems genetics approach delineates the role of Bcl2 in leukemia pathogenesis. | Wang X et al. | — | 2022 | → |
| A Unified Genomic Mechanism of Cell-Fate Change. | Tsuchiya M et al. | — | 2022 | → |
| Auto-annotating sleep stages based on polysomnographic data. | Zhang H et al. | — | 2022 | → |
| A versatile and interoperable computational framework for the analysis and modeling of COVID-19 disease mechanisms | Niarakis A et al. | — | 2022 | — |
| Benchmarking of analysis strategies for data-independent acquisition proteomics using a large-scale dataset comprising inter-patient heterogeneity. | Fröhlich K et al. | — | 2022 | → |
| Benchmarking transcriptional host response signatures for infection diagnosis. | Chawla DG et al. | — | 2022 | → |
| Bioinformatics analysis of candidate genes and potential therapeutic drugs targeting adipose tissue in obesity. | Yu Y et al. | — | 2022 | → |
| Bioinformatics Prediction and Machine Learning on Gene Expression Data Identifies Novel Gene Candidates in Gastric Cancer. | Kori M et al. | — | 2022 | → |
| Blood Transcriptome Profiling Links Immunity to Disease Severity in Myotonic Dystrophy Type 1 (DM1). | Nieuwenhuis S et al. | — | 2022 | → |
| Brassinosteroid-induced gene repression requires specific and tight promoter binding of BIL1/BZR1 via DNA shape readout. | Nosaki S et al. | — | 2022 | → |
| Capsaicin restores sodium iodine symporter-mediated radioiodine uptake through bypassing canonical TSH‒TSHR pathway in anaplastic thyroid carcinoma cells. | Xu S et al. | — | 2022 | → |
| Cardiomyocyte p38 MAPKα suppresses a heart-adipose tissue-neutrophil crosstalk in heart failure development. | Bottermann K et al. | — | 2022 | → |
| Cell-type modeling in spatial transcriptomics data elucidates spatially variable colocalization and communication between cell-types in mouse brain. | Grisanti Canozo FJ et al. | — | 2022 | → |
| Characterization of <i>Cronobacter sakazakii</i> Strains Originating from Plant-Origin Foods Using Comparative Genomic Analyses and Zebrafish Infectivity Studies. | Jang H et al. | — | 2022 | → |
| Characterization of the Estrogen Response Helps to Predict Prognosis and Identify Potential Therapeutic Targets in Cholangiocarcinoma. | Lu C et al. | — | 2022 | → |
| CLEC12B Is a Melanocytic Gene Regulating the Color of the Skin. | Sormani L et al. | — | 2022 | → |
| Clioquinol as an inhibitor of JmjC-histone demethylase exhibits common and unique histone methylome and transcriptome between clioquinol and hypoxia. | Moon Y et al. | — | 2022 | → |
| COL3A1 Overexpression Associates with Poor Prognosis and Cisplatin Resistance in Lung Cancer | Wang L et al. | — | 2022 | → |
| Combined signatures of serum proteome and transcriptome in patients with recurrent aphthous ulcer. | Bao J et al. | — | 2022 | → |
| Combined synchronization and superovulation treatments negatively impact embryo viability possibly by the downregulation of WNT/β-catenin and Notch signaling genes in the porcine endometrium. | Gonzalez-Ramiro H et al. | — | 2022 | → |
| Comparative efficacy and mechanism of action of cardiac progenitor cells after cardiac injury. | Gunasekaran M et al. | — | 2022 | → |
| Comparative Gene Expression Analysis Reveals Similarities and Differences of Chronic Myeloid Leukemia Phases. | Schwarz A et al. | — | 2022 | → |
| Comprehensive analysis of endoplasmic reticulum stress and immune infiltration in major depressive disorder. | Zhang J et al. | — | 2022 | → |
| Computational Approaches for RNA Structure Ensemble Deconvolution from Structure Probing Data. | Aviran S et al. | — | 2022 | → |
| Connexin 30 Deficiency Ameliorates Disease Progression at the Early Phase in a Mouse Model of Amyotrophic Lateral Sclerosis by Suppressing Glial Inflammation. | Hashimoto Y et al. | — | 2022 | → |
| Correlation of Transcriptomics and FDG-PET SUVmax Indicates Reciprocal Expression of Stemness-Related Transcription Factor and Neuropeptide Signaling Pathways in Glucose Metabolism of Ewing Sarcoma. | Prexler C et al. | — | 2022 | → |
| CRISPRi-mediated knock-down of PRDM1/BLIMP1 programs central memory differentiation in <i>ex vivo</i>-expanded human T cells. | Azadbakht M et al. | — | 2022 | → |
| CXCL8 Facilitates the Survival and Paclitaxel-Resistance of Triple-Negative Breast Cancers. | Yi M et al. | — | 2022 | → |
| CytofIn enables integrated analysis of public mass cytometry datasets using generalized anchors. | Lo YC et al. | — | 2022 | → |
| Cytokinin increases vegetative growth period by suppressing florigen expression in rice and maize. | Cho LH et al. | — | 2022 | → |
| Decision Theory versus Conventional Statistics for Personalized Therapy of Breast Cancer. | Kenn M et al. | — | 2022 | → |
| Depth normalization of small RNA sequencing: using data and biology to select a suitable method. | Düren Y et al. | — | 2022 | → |
| Development and validation of cuproptosis-associated prognostic signatures in WHO 2/3 glioma. | Ye Z et al. | — | 2022 | → |
| Differential analysis of RNA structure probing experiments at nucleotide resolution: uncovering regulatory functions of RNA structure. | Yu B et al. | — | 2022 | → |
| Differential Expression of miRNAs in Trichloroethene-Mediated Inflammatory/Autoimmune Response and Its Modulation by Sulforaphane: Delineating the Role of miRNA-21 and miRNA-690. | Banerjee N et al. | — | 2022 | → |
| Differential gene expression during recall of behaviorally conditioned immune enhancement in rats: a pilot study. | Rueckels M et al. | — | 2022 | → |
| Direct control of lysosomal catabolic activity by mTORC1 through regulation of V-ATPase assembly. | Ratto E et al. | — | 2022 | → |
| Dissecting genetic links between Alzheimer's disease and type 2 diabetes mellitus in a systems biology way. | Kang P et al. | — | 2022 | → |
| DNA methylation in human gastric epithelial cells defines regional identity without restricting lineage plasticity. | Fritsche K et al. | — | 2022 | → |
| DOCK8-expressing T follicular helper cells newly generated beyond self-organized criticality cause systemic lupus erythematosus. | Shiozawa S et al. | — | 2022 | → |
| DREAM interrupted: severing LIN-35-MuvB association in Caenorhabditis elegans impairs DREAM function but not its chromatin localization. | Goetsch PD et al. | — | 2022 | → |
| Drug Repositioning Identifies Six Drug Candidates for Systemic Autoimmune Diseases by Integrative Analyses of Transcriptomes from Scleroderma, Systemic Lupus Erythematosus, and Sjogren's Syndrome. | Oktem EK et al. | — | 2022 | → |
| Drug repurposing for rheumatoid arthritis: Identification of new drug candidates <i>via</i> bioinformatics and text mining analysis. | Unal U et al. | — | 2022 | → |
| E3 ligase BRUTUS Is a Negative Regulator for the Cellular Energy Level and the Expression of Energy Metabolism-Related Genes Encoded by Two Organellar Genomes in Leaf Tissues. | Choi B et al. | — | 2022 | → |
| E-Cadherin-Deficient Cells Are Sensitive to the Multikinase Inhibitor Dasatinib. | Bougen-Zhukov N et al. | — | 2022 | → |
| Effects of nutrient restriction during early or mid-gestation in bovine on placental development and miRNA expression in the cotyledon. | Taylor RK et al. | — | 2022 | → |
| Estimation of tumor cell total mRNA expression in 15 cancer types predicts disease progression. | Cao S et al. | — | 2022 | → |
| Ethylene responsive factor34 mediates stress-induced leaf senescence by regulating salt stress-responsive genes. | Park SJ et al. | — | 2022 | → |
| Evaluation of reference genes for RT-qPCR gene expression analysis in Arabidopsis thaliana exposed to elevated temperatures. | Škiljaica A et al. | — | 2022 | → |
| Expression Analysis of Ligand-Receptor Pairs Identifies Cell-to-Cell Crosstalk between Macrophages and Tumor Cells in Lung Adenocarcinoma. | Yang X et al. | — | 2022 | → |
| Extracting Information from Gene Coexpression Networks of <i>Rhizobium leguminosarum</i>. | Pardo-Diaz J et al. | — | 2022 | → |
| Flow cytometry-based study of model marine microalgal consortia revealed an ecological advantage of siderophore utilization by the dinoflagellate <i>Amphidinium carterae</i>. | Malych R et al. | — | 2022 | → |
| Forecasting Gastric Cancer Diagnosis, Prognosis, and Drug Repurposing with Novel Gene Expression Signatures. | Demirtas TY et al. | — | 2022 | → |
| From cell lines to cancer patients: personalized drug synergy prediction. | Kuru HI et al. | — | 2022 | → |
| Gene co-expression network analysis revealed novel biomarkers for ovarian cancer. | Kasavi C | — | 2022 | → |
| Gene Expression-Based Signature Can Predict Sorafenib Response in Kidney Cancer. | Gudkov A et al. | — | 2022 | → |
| Gene network profiling in muscle-invasive bladder cancer: A systematic review and meta-analysis. | Isali I et al. | — | 2022 | → |
| Generating weighted and thresholded gene coexpression networks using signed distance correlation. | Pardo-Diaz J et al. | — | 2022 | → |
| Genome-wide Meta-analysis Reveals New Gene Signatures and Potential Drug Targets of Hypertension. | Ali F et al. | — | 2022 | → |
| Genomic Characterization by Whole-Exome Sequencing of Hypermobility Spectrum Disorder. | Alanis-Funes GJ et al. | — | 2022 | → |
| Glycation modulates glutamatergic signaling and exacerbates Parkinson's disease-like phenotypes. | Chegão A et al. | — | 2022 | → |
| High-dimensional genomic feature selection with the ordered stereotype logit model. | Seffernick AE et al. | — | 2022 | → |
| Histone deacetylase 4 reverses cellular senescence via DDIT4 in dermal fibroblasts. | Lee Y et al. | — | 2022 | → |
| Host Respiratory Transcriptome Signature Associated with Poor Outcome in Children with Influenza-Staphylococcus aureus Pneumonia. | Britto C et al. | — | 2022 | → |
| HPS protects the liver against steatosis, cell death, inflammation, and fibrosis in mice with steatohepatitis. | Yang Y et al. | — | 2022 | → |
| Hyperphosphorylated Human Tau Accumulates at the Synapse, Localizing on Synaptic Mitochondrial Outer Membranes and Disrupting Respiration in a Mouse Model of Tauopathy. | Trease AJ et al. | — | 2022 | → |
| Hypothalamic Neurochemical Changes in Long-Term Recovered Bilateral Subdiaphragmatic Vagotomized Rats. | Kobrzycka AT et al. | — | 2022 | → |
| Identification and Characterization of SOG1 (Suppressor of Gamma Response 1) Homologues in Plants Using Data Mining Resources and Gene Expression Profiling. | Pagano A et al. | — | 2022 | → |
| Identification of a Five-mRNA Signature as a Novel Potential Prognostic Biomarker for Glioblastoma by Integrative Analysis. | Xu H et al. | — | 2022 | → |
| Identification of cell type-specific correlations between ERK activity and cell viability upon treatment with ERK1/2 inhibitors. | Lebedev TD et al. | — | 2022 | → |
| Identification of early diagnostic biomarkers via WGCNA in gastric cancer. | Rezaei Z et al. | — | 2022 | → |
| Identification of Hub Genes and Immune-Related Pathways for Membranous Nephropathy by Bioinformatics Analysis. | Cai XY et al. | — | 2022 | → |
| Identification of Key Endometrial MicroRNAs and Their Target Genes Associated With Pathogenesis of Recurrent Implantation Failure by Integrated Bioinformatics Analysis. | Shang J et al. | — | 2022 | → |
| Identification of Key microRNAs and Genes in Infantile Hemangiomas. | Fu C et al. | — | 2022 | → |
| Identification of Molecular Subtypes in Head and Neck Squamous Cell Carcinoma Based on Dysregulated Immune LncRNAs. | Du Y et al. | — | 2022 | → |
| Identification of Novel mRNA Isoforms Associated with Acute Heat Stress Response Using RNA Sequencing Data in Sprague Dawley Rats. | Dou J et al. | — | 2022 | → |
| Identification of Novel Vascular Genes Downstream of Islet2 and Nr2f1b Transcription Factors. | Li RF et al. | — | 2022 | → |
| IFNγ regulates NAD+ metabolism to promote the respiratory burst in human monocytes. | McCann KJ et al. | — | 2022 | → |
| <i>LIMS2</i> is Downregulated in Osteosarcoma and Inhibits Cell Growth and Migration. | Su C et al. | — | 2022 | → |
| Immunogenic cell death-related risk signature predicts prognosis and characterizes the tumour microenvironment in lower-grade glioma. | Cai J et al. | — | 2022 | → |
| Immunomodulatory Cell Therapy Using αGalCer-Pulsed Dendritic Cells Ameliorates Heart Failure in a Murine Dilated Cardiomyopathy Model. | Ikeda M et al. | — | 2022 | → |
| Impact of Aligner, Normalization Method, and Sequencing Depth on TempO-seq Accuracy. | Everett LJ et al. | — | 2022 | → |
| Impact of gene annotation choice on the quantification of RNA-seq data. | Chisanga D et al. | — | 2022 | → |
| Integrated Analysis of Gene Expression and Metabolite Data Reveals Candidate Molecular Markers in Colorectal Carcinoma. | Yang J et al. | — | 2022 | → |
| Integrated Analysis Reveals the Characteristics and Effects of SARS-CoV-2 Maternal-Fetal Transmission. | Huang Z et al. | — | 2022 | → |
| Integrated High-Throughput Sequencing, Microarray Hybridization and Degradome Analysis Uncovers MicroRNA-Mediated Resistance Responses of Maize to Pathogen <i>Curvularia lunata</i>. | Wang W et al. | — | 2022 | → |
| Intestinal epithelial c-Maf expression determines enterocyte differentiation and nutrient uptake in mice. | Cosovanu C et al. | — | 2022 | → |
| Laser Capture Microdissection-Based mRNA Expression Microarrays and Single-Cell RNA Sequencing in Atherosclerosis Research. | Zhang X et al. | — | 2022 | → |
| Lysosomal enzyme trafficking factor LYSET enables nutritional usage of extracellular proteins. | Pechincha C et al. | — | 2022 | → |
| Lysyl hydroxylase 2 deficiency promotes filopodia formation and fibroblast migration. | Nozaki R et al. | — | 2022 | → |
| Machine-Learning Analysis of Serum Proteomics in Neuropathic Pain after Nerve Injury in Breast Cancer Surgery Points at Chemokine Signaling via SIRT2 Regulation. | Lötsch J et al. | — | 2022 | → |
| Machine learning-guided evaluation of extraction and simulation methods for cancer patient-specific metabolic models. | Lee SM et al. | — | 2022 | → |
| MAFFIN: metabolomics sample normalization using maximal density fold change with high-quality metabolic features and corrected signal intensities. | Yu H et al. | — | 2022 | → |
| Methods for predicting single-cell miRNA in breast cancer. | Zhao C et al. | — | 2022 | → |
| Microarray Data Preprocessing: From Experimental Design to Differential Analysis. | Federico A et al. | — | 2022 | → |
| Microglial amyloid beta clearance is driven by PIEZO1 channels. | Jäntti H et al. | — | 2022 | → |
| MicroRNA expression profile predicts prognosis of pediatric adrenocortical tumors. | Veronez LC et al. | — | 2022 | → |
| miRNA-Profiling in Ejaculated and Epididymal Pig Spermatozoa and Their Relation to Fertility after Artificial Insemination. | Martinez CA et al. | — | 2022 | → |
| MTHFD1L knockdown diminished cells growth in papillary thyroid cancer. | Yi D et al. | — | 2022 | → |
| Multiomic Analysis Reveals Comprehensive Tumor Heterogeneity and Distinct Immune Subtypes in Multifocal Intrahepatic Cholangiocarcinoma. | Chen S et al. | — | 2022 | → |
| Multivariate analysis of NMR-based metabolomic data. | Debik J et al. | — | 2022 | → |
| Myeloid cell interferon secretion restricts Zika flavivirus infection of developing and malignant human neural progenitor cells. | Bulstrode H et al. | — | 2022 | → |
| Nicotinamide (niacin) supplement increases lipid metabolism and ROS-induced energy disruption in triple-negative breast cancer: potential for drug repositioning as an anti-tumor agent. | Jung M et al. | — | 2022 | → |
| Normalization benchmark of ATAC-seq datasets shows the importance of accounting for GC-content effects. | Van den Berge K et al. | — | 2022 | → |
| Normics: Proteomic Normalization by Variance and Data-Inherent Correlation Structure. | Dressler FF et al. | — | 2022 | → |
| NOTCH-YAP1/TEAD-DNMT1 Axis Drives Hepatocyte Reprogramming Into Intrahepatic Cholangiocarcinoma. | Hu S et al. | — | 2022 | → |
| Novel cell lines derived from Chinese hamster kidney tissue. | Kawabe Y et al. | — | 2022 | → |
| NPC transplantation rescues sci-driven cAMP/EPAC2 alterations, leading to neuroprotection and microglial modulation. | Martínez-Rojas B et al. | — | 2022 | → |
| Nuclear HMGB1 protects from nonalcoholic fatty liver disease through negative regulation of liver X receptor. | Personnaz J et al. | — | 2022 | → |
| Optimized sample preparation and data analysis for TMT proteomic analysis of cerebrospinal fluid applied to the identification of Alzheimer's disease biomarkers. | Weiner S et al. | — | 2022 | → |
| Phylogenomic Analysis of Salmonella enterica subsp. enterica Serovar Bovismorbificans from Clinical and Food Samples Using Whole Genome Wide Core Genes and kmer Binning Methods to Identify Two Distinct Polyphyletic Genome Pathotypes | Gopinath GR et al. | — | 2022 | → |
| Physiological intron retaining transcripts in the cytoplasm abound during human motor neurogenesis. | Petrić Howe M et al. | — | 2022 | → |
| Placenta-derived proteins across gestation in healthy pregnancies-a novel approach to assess placental function? | Degnes ML et al. | — | 2022 | → |
| Prenatal stress, anxiety and depression alter transcripts, proteins and pathways associated with immune responses at the maternal-fetal interface†. | Martinez CA et al. | — | 2022 | → |
| Prognostic value of γ-aminobutyric acidergic synapse-associated signature for lower-grade gliomas. | Jiang H et al. | — | 2022 | → |
| Pro-MAP: a robust pipeline for the pre-processing of single channel protein microarray data. | Mowoe MO et al. | — | 2022 | → |
| Purifying selection enduringly acts on the sequence evolution of highly expressed proteins in Escherichia coli. | Shibai A et al. | — | 2022 | → |
| Quantitative proteomic analysis of oxaliplatin induced peripheral neurotoxicity. | Yang L et al. | — | 2022 | → |
| Quantitative Real-Time Analysis of Differentially Expressed Genes in Peripheral Blood Samples of Hypertension Patients. | Ali F et al. | — | 2022 | → |
| Repositioning of Anti-Inflammatory Drugs for the Treatment of Cervical Cancer Sub-Types. | Kori M et al. | — | 2022 | → |
| RNA Microarray-Based Comparison of Innate Immune Phenotypes between Human THP-1 Macrophages Stimulated with Two BCG Strains. | Molina-Olvera G et al. | — | 2022 | → |
| Robust normalization and transformation techniques for constructing gene coexpression networks from RNA-seq data. | Johnson KA et al. | — | 2022 | → |
| Role of ferroptosis-associated genes in ankylosing spondylitis and immune cell infiltration. | Li Q et al. | — | 2022 | → |
| SENP2 suppresses browning of white adipose tissues by de-conjugating SUMO from C/EBPβ. | Lee JS et al. | — | 2022 | → |
| Sensitive period-regulating genetic pathways and exposure to adversity shape risk for depression. | Zhu Y et al. | — | 2022 | → |
| Subtype of Neuroblastoma Cells with High KIT Expression Are Dependent on KIT and Its Knockdown Induces Compensatory Activation of Pro-Survival Signaling. | Lebedev T et al. | — | 2022 | → |
| Subtypes in pancreatic ductal adenocarcinoma based on niche factor dependency show distinct drug treatment responses. | Shinkawa T et al. | — | 2022 | → |
| Superoxide Dismutase-3 Downregulates Laminin α5 Expression in Tumor Endothelial Cells via the Inhibition of Nuclear Factor Kappa B Signaling. | Carmona-Rodríguez L et al. | — | 2022 | → |
| Systemic Analyses of the Expression of TPI1 and Its Associations with Tumor Microenvironment in Lung Adenocarcinoma and Squamous Cell Carcinoma. | Yang X et al. | — | 2022 | → |
| The EMT-activator ZEB1 is unrelated to platinum drug resistance in ovarian cancer but is predictive of survival. | Rae S et al. | — | 2022 | → |
| The hepatocyte insulin receptor is required to program the liver clock and rhythmic gene expression. | Fougeray T et al. | — | 2022 | → |
| The human host response to monkeypox infection: a proteomic case series study. | Wang Z et al. | — | 2022 | → |
| The proteome of distal nerves: implication in delayed repair and poor functional recovery. | Guo S et al. | — | 2022 | → |
| The proteomic characterization of the peritumor microenvironment in human hepatocellular carcinoma. | Gu Y et al. | — | 2022 | → |
| The Sum of Two Halves May Be Different from the Whole-Effects of Splitting Sequencing Samples Across Lanes. | Williams EC et al. | — | 2022 | → |
| The two clock proteins CCA1 and LHY activate VIN3 transcription during vernalization through the vernalization-responsive cis-element. | Kyung J et al. | — | 2022 | → |
| TMED2/9/10 Serve as Biomarkers for Poor Prognosis in Head and Neck Squamous Carcinoma. | Gao W et al. | — | 2022 | → |
| TNF signaling pathway-mediated microglial activation in the PFC underlies acute paradoxical sleep deprivation-induced anxiety-like behaviors in mice. | Liu H et al. | — | 2022 | → |
| Transcriptome analysis of aphids exposed to glandular trichomes in tomato reveals stress and starvation related responses. | Planelló R et al. | — | 2022 | → |
| Transcriptome-wide association study reveals cholesterol metabolism gene Lpl is a key regulator of cognitive dysfunction. | Hu W et al. | — | 2022 | → |
| Transcriptomic Harmonization as the Way for Suppressing Cross-Platform Bias and Batch Effect. | Borisov N et al. | — | 2022 | → |
| Transcriptomics and network analysis highlight potential pathways in the pathogenesis of pterygium. | de Guimarães JA et al. | — | 2022 | → |
| Transient Inhibition of the JAK/STAT Pathway Prevents B-ALL Development in Genetically Predisposed Mice. | Casado-García A et al. | — | 2022 | → |
| Tyrosine Kinase Inhibitor Independent Gene Expression Signature in CML Offers New Targets for LSPC Eradication Therapy. | Gómez-Castañeda E et al. | — | 2022 | → |
| Unique Transcriptomic Changes Underlie Hormonal Interactions During Mammary Histomorphogenesis in Female Pigs. | Trott JF et al. | — | 2022 | → |
| Using genome-wide expression compendia to study microorganisms. | Lee AJ et al. | — | 2022 | → |
| Whole-Blood Transcriptional Profiles Enable Early Prediction of the Presence of Coronary Atherosclerosis and High-Risk Plaque Features at Coronary CT Angiography. | Andreini D et al. | — | 2022 | → |
| Acclimation of Photosynthesis to Changes in the Environment Results in Decreases of Oxidative Stress in <i>Arabidopsis thaliana</i>. | Karim MF et al. | — | 2021 | → |
| Active bacterial modification of the host environment through RNA polymerase II inhibition. | Ambite I et al. | — | 2021 | → |
| Adipose Tissue Dysfunctions in Response to an Obesogenic Diet Are Reduced in Mice after Transgenerational Supplementation with Omega 3 Fatty Acids. | Pinel A et al. | — | 2021 | → |
| Advanced Fiber Type-Specific Protein Profiles Derived from Adult Murine Skeletal Muscle. | Eggers B et al. | — | 2021 | → |
| Analysis and verification of <i>N</i><sup>6</sup>-methyladenosine-modified genes as novel biomarkers for clear cell renal cell carcinoma. | Yang Z et al. | — | 2021 | → |
| An ancient, conserved gene regulatory network led to the rise of oral venom systems. | Barua A et al. | — | 2021 | → |
| An integrated workflow for biomarker development using microRNAs in extracellular vesicles for cancer precision medicine. | Chen Y et al. | — | 2021 | → |
| An Integrative Transcriptomic Analysis of Systemic Juvenile Idiopathic Arthritis for Identifying Potential Genetic Markers and Drug Candidates. | Kim D et al. | — | 2021 | → |
| A novel oral nutritional supplement improves gait speed and mitochondrial functioning compared to standard care in older adults with (or at risk of) undernutrition: results from a randomized controlled trial. | Grootswagers P et al. | — | 2021 | → |
| A novel platform for discovery of differentially expressed microRNAs in patients with repeated implantation failure. | Chen CH et al. | — | 2021 | → |
| Anti-TROVE2 Antibody Determined by Immune-Related Array May Serve as a Predictive Marker for Adalimumab Immunogenicity and Effectiveness in RA. | Chen PK et al. | — | 2021 | → |
| A pan-cancer survey of cell line tumor similarity by feature-weighted molecular profiles. | Sinha R et al. | — | 2021 | → |
| Aryl hydrocarbon receptor controls skin homeostasis, regeneration, and hair follicle cycling by adjusting epidermal stem cell function. | Rico-Leo EM et al. | — | 2021 | → |
| Association between microRNA-527 and glypican-3 in hepatocellular carcinoma. | Nomura K et al. | — | 2021 | → |
| Ayurvedic Herbal Preparation Supplementation Does Not Improve Metabolic Health in Impaired Glucose Tolerance Subjects; Observations from a Randomised Placebo Controlled Trial. | Esser D et al. | — | 2021 | → |
| Berberine Inhibits MDA-MB-231 Cells as an Agonist of G Protein-Coupled Estrogen Receptor 1. | Qi M et al. | — | 2021 | → |
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| Blood Circulating miRNA Pairs as a Robust Signature for Early Detection of Esophageal Cancer. | Song Y et al. | — | 2021 | → |
| BUTTERFLY: addressing the pooled amplification paradox with unique molecular identifiers in single-cell RNA-seq. | Gustafsson J et al. | — | 2021 | → |
| Cancer Cells Retrace a Stepwise Differentiation Program during Malignant Progression. | Saghafinia S et al. | — | 2021 | → |
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| Cisplatin's potential for type 2 diabetes repositioning by inhibiting CDKN1A, FAS, and SESN1. | Muhammad SA et al. | — | 2021 | → |
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| Comparative Transcriptome Analysis to Identify Candidate Genes for <i>FaRCg1</i> Conferring Resistance Against <i>Colletotrichum gloeosporioides</i> in Cultivated Strawberry (<i>Fragaria</i> × <i>ananassa</i>). | Chandra S et al. | — | 2021 | → |
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| Current State of Metabolomics Research in Meat Quality Analysis and Authentication. | Zhang T et al. | — | 2021 | → |
| CYTOKININ-RESPONSIVE GROWTH REGULATOR regulates cell expansion and cytokinin-mediated cell cycle progression. | Park J et al. | — | 2021 | → |
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| ETS-Domain Transcription Factor Elk-1 Regulates Stemness Genes in Brain Tumors and CD133+ BrainTumor-Initiating Cells. | Sogut MS et al. | — | 2021 | → |
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| Experimental long-term diabetes mellitus alters the transcriptome and biomechanical properties of the rat urinary bladder. | Hindi EA et al. | — | 2021 | → |
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| Exploring effects of DNA methylation and gene expression on pan-cancer drug response by mathematical models. | Lv W et al. | — | 2021 | → |
| Expression Changes in Epigenetic Gene Pathways Associated With One-Carbon Nutritional Metabolites in Maternal Blood From Pregnancies Resulting in Autism and Non-Typical Neurodevelopment. | Zhu Y et al. | — | 2021 | → |
| Extensive remodeling of the extracellular matrix during aging contributes to age-dependent impairments of muscle stem cell functionality. | Schüler SC et al. | — | 2021 | → |
| Extent, impact, and mitigation of batch effects in tumor biomarker studies using tissue microarrays. | Stopsack KH et al. | — | 2021 | → |
| Extracellular Matrix Characterization in Gastric Cancer Helps to Predict Prognosis and Chemotherapy Response. | Yang Z et al. | — | 2021 | → |
| FIREcaller: Detecting frequently interacting regions from Hi-C data. | Crowley C et al. | — | 2021 | → |
| FOS licenses early events in stem cell activation driving skeletal muscle regeneration. | Almada AE et al. | — | 2021 | → |
| Galaxy and MEAN Stack to Create a User-Friendly Workflow for the Rational Optimization of Cancer Chemotherapy. | Pires JG et al. | — | 2021 | → |
| Gene Expression Changes Associated with Dedifferentiation in Liposarcoma Predict Overall Survival. | Shannon NB et al. | — | 2021 | → |
| Gene set enrichment analysis for genome-wide DNA methylation data. | Maksimovic J et al. | — | 2021 | → |
| Genetic or Toxicant-Induced Disruption of Vesicular Monoamine Storage and Global Metabolic Profiling in Caenorhabditis elegans. | Bradner JM et al. | — | 2021 | → |
| Growth at 5 kPa Causes Differential Expression of a Number of Signals in a <i>Bacillus subtilis</i> Strain Adapted to Enhanced Growth at Low Pressure. | Waters SM et al. | — | 2021 | → |
| Growth factor signaling predicts therapy resistance mechanisms and defines neuroblastoma subtypes. | Lebedev T et al. | — | 2021 | → |
| Hepatic steatosis and steatohepatitis: a functional meta-analysis of sex-based differences in transcriptomic studies. | Català-Senent JF et al. | — | 2021 | → |
| High-dimensional covariance matrices tests for analyzing multi-tumor gene expression data. | Qayed A et al. | — | 2021 | → |
| High-Throughput Sequencing Analysis of the Composition and Diversity of the Bacterial Community in <i>Cinnamomum camphora</i> Soil. | Chen D et al. | — | 2021 | → |
| Host Transcriptome and Microbiota Signatures Prior to Immunization Profile Vaccine Humoral Responsiveness. | Gonçalves E et al. | — | 2021 | → |
| Housekeeping genes involved in non-malignant breast phenotypes are widely expressed in multiple cancers and provide novel biomarkers of tumor classification. | Delmonico L et al. | — | 2021 | → |
| hsp-90 and unc-45 depletion induce characteristic transcriptional signatures in coexpression cliques of C. elegans. | Schmauder L et al. | — | 2021 | → |
| Hub microRNAs and genes in the development of atrial fibrillation identified by weighted gene co-expression network analysis. | Qu Q et al. | — | 2021 | → |
| Human blood serum can donor-specifically antagonize effects of EGFR-targeted drugs on squamous carcinoma cell growth. | Kamashev D et al. | — | 2021 | → |
| Hyperglycemic Memory of Innate Immune Cells Promotes In Vitro Proinflammatory Responses of Human Monocytes and Murine Macrophages. | Thiem K et al. | — | 2021 | → |
| Hypoxia-inducible lipid droplet-associated induces DGAT1 and promotes lipid storage in hepatocytes. | de la Rosa Rodriguez MA et al. | — | 2021 | → |
| <i>Ace2</i> and <i>Tmprss2</i> Expressions Are Regulated by <i>Dhx32</i> and Influence the Gastrointestinal Symptoms Caused by SARS-CoV-2. | Xu F et al. | — | 2021 | → |
| Identification and Analysis of Potential Key Genes Associated With Hepatocellular Carcinoma Based on Integrated Bioinformatics Methods. | Li Z et al. | — | 2021 | → |
| Identification and validation of potential mRNA- microRNA- long-noncoding RNA (mRNA-miRNA-lncRNA) prognostic signature for cervical cancer. | Wang J et al. | — | 2021 | → |
| Identification of a ten-long noncoding RNA signature for predicting the survival and immune status of patients with bladder urothelial carcinoma based on the GEO database: a superior machine learning model. | Mao X et al. | — | 2021 | → |
| Identification of differentially expressed genes using microarray analysis and COL6A1 induction of bone metastasis in non-small cell lung cancer. | Li N et al. | — | 2021 | → |
| Identification of gene signatures and potential therapeutic targets for acquired chemotherapy resistance in gastric cancer patients. | Sun J et al. | — | 2021 | → |
| Identification of G-protein signaling modulator 2 as a diagnostic and prognostic biomarker of pancreatic adenocarcinoma: an exploration of its regulatory mechanisms. | Zhou X et al. | — | 2021 | → |
| Identification of KHSRP-Regulated RNAs in Esophageal Cancer by Integrated Bioinformatics Analysis. | Chen L et al. | — | 2021 | → |
| Identification of miR-4793-3p as a potential biomarker for bacterial infection in patients with hepatitis B virus-related liver cirrhosis: A pilot study. | Lin S et al. | — | 2021 | → |
| Identification of prognostic and bone metastatic alternative splicing signatures in bladder cancer. | Huang R et al. | — | 2021 | → |
| Identification of Prognostic Signature and Gliclazide as Candidate Drugs in Lung Adenocarcinoma. | Cheng Y et al. | — | 2021 | → |
| Identification of SLC38A7 as a Prognostic Marker and Potential Therapeutic Target of Lung Squamous Cell Carcinoma. | Haratake N et al. | — | 2021 | → |
| Identification of transcriptional subtypes in lung adenocarcinoma and squamous cell carcinoma through integrative analysis of microarray and RNA sequencing data. | Fauteux F et al. | — | 2021 | → |
| Identification of transcriptome alterations in the prefrontal cortex, hippocampus, amygdala and hippocampus of suicide victims. | Glavan D et al. | — | 2021 | → |
| Immunomodulating effects of 13- and 16-hydroxylated docosahexaenoyl ethanolamide in LPS stimulated RAW264.7 macrophages. | de Bus I et al. | — | 2021 | → |
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| Impact of the polycarbonate strippers used in assisted reproduction techniques on embryonic development. | Moreau J et al. | — | 2021 | → |
| Individual Scent-Marks of Nest Entrances in the Solitary Bee, <i>Osmia cornuta</i> (Hymenoptera: Apoidea). | Frahnert KS et al. | — | 2021 | → |
| Inferring time series chromatin states for promoter-enhancer pairs based on Hi-C data. | Miko H et al. | — | 2021 | → |
| Inhaled multi-walled carbon nanotubes differently modulate global gene and protein expression in rat lungs. | Seidel C et al. | — | 2021 | → |
| INTEDE: interactome of drug-metabolizing enzymes. | Yin J et al. | — | 2021 | → |
| Integrative analyses identified ion channel genes GJB2 and SCNN1B as prognostic biomarkers and therapeutic targets for lung adenocarcinoma. | Lu A et al. | — | 2021 | → |
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| Integrative molecular characterisation of gallbladder cancer reveals micro-environment-associated subtypes. | Nepal C et al. | — | 2021 | → |
| Integrative Systems Biology Analysis Elucidates Mastitis Disease Underlying Functional Modules in Dairy Cattle. | Ghahramani N et al. | — | 2021 | → |
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| Long Non-coding RNA Expression Profiling Using Arraystar LncRNA Microarrays. | Shi Y et al. | — | 2021 | → |
| Long Non-Coding RNA LINC01410 Promoted Tumor Progression <i>via</i> the ErbB Signaling Pathway by Targeting STAT5 in Gallbladder Cancer. | Lu L et al. | — | 2021 | → |
| MACF1 alleviates aging-related osteoporosis via HES1. | Yin C et al. | — | 2021 | → |
| Measurements Methods for the Development of MicroRNA-Based Tests for Cancer Diagnosis. | Precazzini F et al. | — | 2021 | → |
| Mesenchymal glioblastoma-induced mature de-novo vessel formation of vascular endothelial cells in a microfluidic device. | Amemiya T et al. | — | 2021 | → |
| Mesenchymal stem cells negatively regulate CD4<sup>+</sup> T cell activation in patients with primary Sjögren syndrome through the miRNA‑125b and miRNA‑155 TCR pathway. | Gong B et al. | — | 2021 | → |
| Metabolic Analysis of the Development of the Plant-Parasitic Cyst Nematodes <i>Heterodera schachtii</i> and <i>Heterodera trifolii</i> by Capillary Electrophoresis Time-of-Flight Mass Spectrometry. | Assefa AD et al. | — | 2021 | → |
| Metabolic changes induced by oral glucose tests in horses and their diagnostic use. | Delarocque J et al. | — | 2021 | → |
| Metabolic impact of weight variations in Icelandic horses. | Delarocque J et al. | — | 2021 | → |
| Metabolic profile distinguishes laminitis-susceptible and -resistant ponies before and after feeding a high sugar diet. | Delarocque J et al. | — | 2021 | → |
| Microglia contributes to remyelination in cerebral but not spinal cord ischemia. | Pavic G et al. | — | 2021 | → |
| MicroRNA 132-3p Is Upregulated in Laron Syndrome Patients and Controls Longevity Gene Expression. | Yaron-Saminsky D et al. | — | 2021 | → |
| Mining influential genes based on deep learning. | Kong L et al. | — | 2021 | → |
| Mining Protein Expression Databases Using Network Meta-Analysis. | Winter C et al. | — | 2021 | → |
| Molecular stratification by BCL2A1 and AIM2 provides additional prognostic value in penile squamous cell carcinoma. | Tan X et al. | — | 2021 | → |
| Multivariate meta-analysis reveals global transcriptomic signatures underlying distinct human naive-like pluripotent states. | Johnson KR et al. | — | 2021 | → |
| MUREN: a robust and multi-reference approach of RNA-seq transcript normalization. | Feng Y et al. | — | 2021 | → |
| Mutations in hik26 and slr1916 lead to high-light stress tolerance in Synechocystis sp. PCC6803. | Yoshikawa K et al. | — | 2021 | → |
| Network-based identification of key master regulators associated with an immune-silent cancer phenotype. | Mall R et al. | — | 2021 | → |
| Nkx3-1 and Fech genes might be switch genes involved in pituitary non-functioning adenoma invasiveness. | Khayer N et al. | — | 2021 | → |
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| Notch signaling and natural killer cell infiltration in tumor tissues underlie medulloblastoma prognosis. | Liang KH et al. | — | 2021 | → |
| Novel Targets in a High-Altitude Pulmonary Hypertension Rat Model Based on RNA-seq and Proteomics. | Xu X et al. | — | 2021 | → |
| Orthodenticle homeobox OTX1 is a potential prognostic biomarker for bladder cancer. | Jiang L et al. | — | 2021 | → |
| Paired-like homeodomain 2B contributes to tumour progression and anti-autophagy in human lung cancer. | Wang CC et al. | — | 2021 | → |
| Paralogs in the PKA Regulon Traveled Different Evolutionary Routes to Divergent Expression in Budding Yeast. | Heineike BM et al. | — | 2021 | → |
| Paramylon extracted from <i>Euglena gracilis</i> EOD-1 augmented the expression of SIRT1. | Ieiri H et al. | — | 2021 | → |
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| Predicting Lyme Disease From Patients' Peripheral Blood Mononuclear Cells Profiled With RNA-Sequencing. | Clarke DJB et al. | — | 2021 | → |
| Predictors of colorectal cancer survival using cox regression and random survival forests models based on gene expression data. | Mohammed M et al. | — | 2021 | → |
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| Profiling transcriptomic changes and signaling pathways in atopic dermatitis by integrative analyses on multiple databases. | Xu Y et al. | — | 2021 | → |
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| The <i>In Vivo</i> Transcriptomic Blueprint of <i>Mycobacterium tuberculosis</i> in the Lung. | Coppola M et al. | — | 2021 | → |
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| Transcriptome Analysis Reveals Altered Inflammatory Pathway in an Inducible Glial Cell Model of Myotonic Dystrophy Type 1. | Azotla-Vilchis CN et al. | — | 2021 | → |
| Transcriptome comparisons of in vitro intestinal epithelia grown under static and microfluidic gut-on-chip conditions with in vivo human epithelia. | Kulthong K et al. | — | 2021 | → |
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| Transcriptomic alterations in malignant pleural mesothelioma cells in response to long‑term treatment with bullfrog sialic acid‑binding lectin. | Tatsuta T et al. | — | 2021 | → |
| Transcriptomic Analysis Identified Two Subtypes of Brain Tumor Characterized by Distinct Immune Infiltration and Prognosis. | Shen X et al. | — | 2021 | → |
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| Assessing the Multivariate Relationship between the Human Infant Intestinal Exfoliated Cell Transcriptome (Exfoliome) and Microbiome in Response to Diet. | He K et al. | — | 2020 | → |
| Assessment of Metabolic Profiles in Florets of <i>Carthamus</i> Species Using Ultra-Performance Liquid Chromatography-Mass Spectrometry. | Kim J et al. | — | 2020 | → |
| Association of Mps one binder kinase activator 1 (MOB1) expression with poor disease-free survival in individuals with non-small cell lung cancer. | Ando N et al. | — | 2020 | → |
| ATAC-seq normalization method can significantly affect differential accessibility analysis and interpretation. | Reske JJ et al. | — | 2020 | → |
| A Zipf-plot based normalization method for high-throughput RNA-seq data. | Wang B | — | 2020 | → |
| Benchmarking of cell type deconvolution pipelines for transcriptomics data. | Avila Cobos F et al. | — | 2020 | → |
| Bile Ductal Transcriptome Identifies Key Pathways and Hub Genes in Clonorchis sinensis-Infected Sprague-Dawley Rats. | Yoo WG et al. | — | 2020 | → |
| BRD4 promotes metastatic potential in oral squamous cell carcinoma through the epigenetic regulation of the MMP2 gene. | Yamamoto T et al. | — | 2020 | → |
| CAncer bioMarker Prediction Pipeline (CAMPP)-A standardized framework for the analysis of quantitative biological data. | Terkelsen T et al. | — | 2020 | → |
| Cancer gene expression profiles associated with clinical outcomes to chemotherapy treatments. | Borisov N et al. | — | 2020 | → |
| Cell-Fate Determination from Embryo to Cancer Development: Genomic Mechanism Elucidated. | Tsuchiya M et al. | — | 2020 | → |
| Cellular expression profiles of Epstein-Barr virus-transformed B-lymphoblastoid cell lines. | Chaiwongkot A et al. | — | 2020 | → |
| Circulating Exosomal miRNAs Signal Circadian Misalignment to Peripheral Metabolic Tissues. | Khalyfa A et al. | — | 2020 | → |
| CITED4 Protects Against Adverse Remodeling in Response to Physiological and Pathological Stress. | Lerchenmüller C et al. | — | 2020 | → |
| CoFly: A gene coexpression database for the fruit fly Drosophila melanogaster. | Liu W et al. | — | 2020 | → |
| COL6A3 expression in adipose tissue cells is associated with levels of the homeobox transcription factor PRRX1. | Dankel SN et al. | — | 2020 | → |
| Combination of PD-L1 and PVR determines sensitivity to PD-1 blockade. | Lee BR et al. | — | 2020 | → |
| Comparative transcriptome analysis of human skeletal muscle in response to cold acclimation and exercise training in human volunteers. | Nascimento EBM et al. | — | 2020 | → |
| Convergence of Prognostic Gene Signatures Suggests Underlying Mechanisms of Human Prostate Cancer Progression. | Luca BA et al. | — | 2020 | → |
| Correlation-centred variable selection of a gene expression signature to predict breast cancer metastasis. | Hikichi S et al. | — | 2020 | → |
| Decreased vitamin C uptake mediated by SLC2A3 promotes leukaemia progression and impedes TET2 restoration. | Liu J et al. | — | 2020 | → |
| Dedifferentiation and neuronal repression define familial Alzheimer's disease. | Caldwell AB et al. | — | 2020 | → |
| Developmentally Driven Changes in Adipogenesis in Different Fat Depots Are Related to Obesity. | Breitfeld J et al. | — | 2020 | → |
| Differential expression of AURKA/PLK4 in quiescence and senescence of osteosarcoma U2OS cells. | Xie XL et al. | — | 2020 | → |
| Diurnal Patterns of Gene Expression in the Dorsal Vagal Complex and the Central Nucleus of the Amygdala - Non-rhythm-generating Brain Regions. | Staehle MM et al. | — | 2020 | → |
| Does the Act of Copulation per se, without Considering Seminal Deposition, Change the Expression of Genes in the Porcine Female Genital Tract? | Alvarez-Rodriguez M et al. | — | 2020 | → |
| Drug Repositioning for P-Glycoprotein Mediated Co-Expression Networks in Colorectal Cancer. | Beklen H et al. | — | 2020 | → |
| Dynamic changes in the brain protein interaction network correlates with progression of Aβ42 pathology in Drosophila. | Scholes HM et al. | — | 2020 | → |
| Early Diagnosis of Pancreatic Ductal Adenocarcinoma by Combining Relative Expression Orderings With Machine-Learning Method. | Zhang ZM et al. | — | 2020 | → |
| Early immune suppression leads to uncontrolled mite proliferation and potent host inflammatory responses in a porcine model of crusted versus ordinary scabies. | Bhat SA et al. | — | 2020 | → |
| Early Response to the Plant Toxin Stenodactylin in Acute Myeloid Leukemia Cells Involves Inflammatory and Apoptotic Signaling. | Mercatelli D et al. | — | 2020 | → |
| Electroacupuncture Mimics Exercise-Induced Changes in Skeletal Muscle Gene Expression in Women With Polycystic Ovary Syndrome. | Benrick A et al. | — | 2020 | → |
| Epigenomes of Human Hearts Reveal New Genetic Variants Relevant for Cardiac Disease and Phenotype. | Tan WLW et al. | — | 2020 | → |
| Epithelial-mesenchymal transition polarization in ovarian carcinomas from patients with high social isolation. | Lutgendorf SK et al. | — | 2020 | → |
| Epstein-Barr virus-encoded miR-BART5-5p upregulates PD-L1 through PIAS3/pSTAT3 modulation, worsening clinical outcomes of PD-L1-positive gastric carcinomas. | Yoon CJ et al. | — | 2020 | → |
| FASTQINS and ANUBIS: two bioinformatic tools to explore facts and artifacts in transposon sequencing and essentiality studies. | Miravet-Verde S et al. | — | 2020 | → |
| Follicular hormone dynamics during the midcycle surge of gonadotropins in women undergoing fertility treatment. | Poulsen LC et al. | — | 2020 | → |
| Gene dysregulation analysis builds a mechanistic signature for prognosis and therapeutic benefit in colorectal cancer. | Li Q et al. | — | 2020 | → |
| Gene expression profiling of primary vitreoretinal lymphoma. | Arai A et al. | — | 2020 | → |
| Gene expression responses to anti-tuberculous drugs in a whole blood model. | Kwan PKW et al. | — | 2020 | → |
| Gene transcription profiling of astheno- and normo-zoospermic sperm subpopulations. | Caballero-Campo P et al. | — | 2020 | → |
| Genome Architecture Facilitates Phenotypic Plasticity in the Honeybee (Apis mellifera). | Duncan EJ et al. | — | 2020 | → |
| GenomeForest: An Ensemble Machine Learning Classifier for Endometriosis. | Akter S et al. | — | 2020 | → |
| Genome wide meta-analysis of cDNA datasets reveals new target gene signatures of colorectal cancer based on systems biology approach. | Ilyas U et al. | — | 2020 | → |
| Genomewide Stabilization of mRNA during a "Feast-to-Famine" Growth Transition in Escherichia coli. | Morin M et al. | — | 2020 | → |
| Genomic profiling of newly diagnosed glioblastoma patients and its potential for clinical utility - a prospective, translational study. | Nørøxe DS et al. | — | 2020 | → |
| Genomic Repeats Categorize Genes with Distinct Functions for Orchestrated Regulation. | Lu JY et al. | — | 2020 | → |
| Genotype by environment interaction for gene expression in Drosophila melanogaster. | Huang W et al. | — | 2020 | → |
| Glucocorticoids prime the inflammatory response of human hippocampal cells through up-regulation of inflammatory pathways. | Horowitz MA et al. | — | 2020 | → |
| Growth differentiation factor 15 protects against the aging-mediated systemic inflammatory response in humans and mice. | Moon JS et al. | — | 2020 | → |
| Hepatocyte-specific deletion of Pparα promotes NAFLD in the context of obesity. | Régnier M et al. | — | 2020 | → |
| Heterotypic signaling between dermal fibroblasts and melanoma cells induces phenotypic plasticity and proteome rearrangement in malignant cells. | Pessotti DS et al. | — | 2020 | → |
| High-throughput laboratory evolution reveals evolutionary constraints in Escherichia coli. | Maeda T et al. | — | 2020 | → |
| Homeobox transcription factor OsZHD2 promotes root meristem activity in rice by inducing ethylene biosynthesis. | Yoon J et al. | — | 2020 | → |
| Human and Mouse Transcriptome Profiling Identifies Cross-Species Homology in Pulmonary and Lymph Node Mononuclear Phagocytes. | Leach SM et al. | — | 2020 | → |
| Hyperactive CDK2 Activity in Basal-like Breast Cancer Imposes a Genome Integrity Liability that Can Be Exploited by Targeting DNA Polymerase ε. | Sviderskiy VO et al. | — | 2020 | → |
| <i>ATRAID</i> regulates the action of nitrogen-containing bisphosphonates on bone. | Surface LE et al. | — | 2020 | → |
| <i>Bex1</i> significantly contributes to the proliferation and invasiveness of malignant tumor cells. | Doi T et al. | — | 2020 | → |
| Identification of common and divergent gene expression signatures in patients with venous and arterial thrombosis using data from public repositories. | Hounkpe BW et al. | — | 2020 | → |
| Identification of Deregulated Pathways, Key Regulators, and Novel miRNA-mRNA Interactions in HPV-Mediated Transformation. | Babion I et al. | — | 2020 | → |
| Identification of epilepsy-associated neuronal subtypes and gene expression underlying epileptogenesis. | Pfisterer U et al. | — | 2020 | → |
| Identification of hub genes involved in the occurrence and development of hepatocellular carcinoma via bioinformatics analysis. | Mi N et al. | — | 2020 | → |
| Identification of methylation states of DNA regions for Illumina methylation BeadChip. | Luo X et al. | — | 2020 | → |
| Identification of MltG as a Prc Protease Substrate Whose Dysregulation Contributes to the Conditional Growth Defect of Prc-Deficient <i>Escherichia coli</i>. | Hsu PC et al. | — | 2020 | → |
| Identification of Molecular Signatures in Mild Intrinsic Atopic Dermatitis by Bioinformatics Analysis. | Yin H et al. | — | 2020 | → |
| Identification of molecules associated with response to abatacept in patients with rheumatoid arthritis. | Yokoyama-Kokuryo W et al. | — | 2020 | → |
| Identification of Post-myocardial Infarction Blood Expression Signatures Using Multiple Feature Selection Strategies. | Li M et al. | — | 2020 | → |
| Identification of potential biomarkers and candidate small molecule drugs in glioblastoma. | Lu WC et al. | — | 2020 | → |
| Identification of Tamoxifen-Resistant Breast Cancer Cell Lines and Drug Response Signature. | Guan Q et al. | — | 2020 | → |
| <i>DHX36</i>, <i>BAX</i>, and <i>ARPC1B</i> May Be Critical for the Diagnosis and Treatment of Tuberculosis. | Zhang Y et al. | — | 2020 | → |
| Immune Complex-Driven Generation of Human Macrophages with Anti-Inflammatory and Growth-Promoting Activity. | Dalby E et al. | — | 2020 | → |
| Immune Profiles Identification by Vaccinomics After MVA Immunization in Randomized Clinical Study. | Sanchez J et al. | — | 2020 | → |
| Increased estrogen levels altered microRNA expression in prostate and plasma of rats dosed with sex hormones. | Nakamura N et al. | — | 2020 | → |
| Inference for variance components in linear mixed-effect models with flexible random effect and error distributions. | Chen T et al. | — | 2020 | → |
| Inhibition of inflammatory signaling in Pax5 mutant cells mitigates B-cell leukemogenesis. | Isidro-Hernández M et al. | — | 2020 | → |
| Integrated Framework of the Immune-Defense Transcriptional Signatures in the Arabidopsis Shoot Apical Meristem. | Naseem M et al. | — | 2020 | → |
| Integrative genomic meta-analysis reveals novel molecular insights into cystic fibrosis and ΔF508-CFTR rescue. | Hodos RA et al. | — | 2020 | → |
| Integrative Informatics Analysis of Transcriptome and Identification of Interacted Genes in the Glomeruli and Tubules in CKD. | Liu L et al. | — | 2020 | → |
| Interactome analysis of gene expression profiles identifies CDC6 as a potential therapeutic target modified by miR-215-5p in hepatocellular carcinoma. | Xu H et al. | — | 2020 | → |
| In vitro toxicological characterisation of the antifungal compound soybean toxin (SBTX). | Arantes MR et al. | — | 2020 | → |
| <i>S</i>-Palmitoylation as a Functional Regulator of Proteins Associated with Cisplatin Resistance in Bladder Cancer. | Shahid M et al. | — | 2020 | → |
| Isolation and Metabolic Assessment of Cancer Cell Mitochondria. | Long NP et al. | — | 2020 | → |
| Key miRNAs associated with memory and learning disorder upon exposure to sevoflurane determined by RNA sequencing. | Sun H et al. | — | 2020 | → |
| LC-N2G: a local consistency approach for nutrigenomics data analysis. | Xu X et al. | — | 2020 | → |
| MatchMixeR: a cross-platform normalization method for gene expression data integration. | Zhang S et al. | — | 2020 | → |
| Membrane expression of the estrogen receptor ERα is required for intercellular communications in the mammary epithelium. | Gagniac L et al. | — | 2020 | → |
| metPropagate: network-guided propagation of metabolomic information for prioritization of metabolic disease genes. | Graham Linck EJ et al. | — | 2020 | → |
| MH-ICP-MS Analysis of the Freshwater and Saltwater Environmental Resources of Upolu Island, Samoa. | Rabieh S et al. | — | 2020 | → |
| Microarray Normalization Revisited for Reproducible Breast Cancer Biomarkers. | Kenn M et al. | — | 2020 | → |
| MicroRNA-1202 plays a vital role in osteoarthritis via KCNQ1OT1 has-miR-1202-ETS1 regulatory pathway. | Liu C et al. | — | 2020 | → |
| MicroRNA-204-5p modulates mitochondrial biogenesis in C2C12 myotubes and associates with oxidative capacity in humans. | Houzelle A et al. | — | 2020 | → |
| MicroRNA Profiling in Adipose Before and After Weight Loss Highlights the Role of miR-223-3p and the NLRP3 Inflammasome. | Macartney-Coxson D et al. | — | 2020 | → |
| miR-199 family contributes to regulation of sonic hedgehog expression during craniofacial development. | Richbourg HA et al. | — | 2020 | → |
| miR-216a-targeting theranostic nanoparticles promote proliferation of insulin-secreting cells in type 1 diabetes animal model. | Wang P et al. | — | 2020 | → |
| MiR-92b-3p is Induced by Advanced Glycation End Products and Involved in the Pathogenesis of Diabetic Nephropathy. | Wang LP et al. | — | 2020 | → |
| Modeling alcohol-induced neurotoxicity using human induced pluripotent stem cell-derived three-dimensional cerebral organoids. | Arzua T et al. | — | 2020 | → |
| Molecular characterization of sorted malignant B cells from patients clinically identified with mantle cell lymphoma. | Hansen MH et al. | — | 2020 | → |
| mRNA and miRNA Profiles of Exosomes from Cultured Tumor Cells Reveal Biomarkers Specific for HPV16-Positive and HPV16-Negative Head and Neck Cancer. | Ludwig S et al. | — | 2020 | → |
| Multiomics Reveals Ectopic ATP Synthase Blockade Induces Cancer Cell Death via a lncRNA-mediated Phospho-signaling Network. | Chang YW et al. | — | 2020 | → |
| Multiparametric Profiling of Engineered Nanomaterials: Unmasking the Surface Coating Effect. | Gallud A et al. | — | 2020 | → |
| Multiplex Immunofluorescence in Formalin-Fixed Paraffin-Embedded Tumor Tissue to Identify Single-Cell-Level PI3K Pathway Activation. | Stopsack KH et al. | — | 2020 | → |
| Novel Prognostic Model for Gastric Cancer using 13 Co-Expression Long Non-Coding RNAs (LncRNAs). | Luo X et al. | — | 2020 | → |
| Obstructive sleep apnea and CPAP therapy alter distinct transcriptional programs in subcutaneous fat tissue. | Gharib SA et al. | — | 2020 | → |
| Perfluorooctanoic acid (PFOA), perfluorooctane sulfonic acid (PFOS), and perfluorononanoic acid (PFNA) increase triglyceride levels and decrease cholesterogenic gene expression in human HepaRG liver cells. | Louisse J et al. | — | 2020 | → |
| Phosphorylated Lamin A/C in the Nuclear Interior Binds Active Enhancers Associated with Abnormal Transcription in Progeria. | Ikegami K et al. | — | 2020 | → |
| Plant TDP1 (Tyrosyl-DNA Phosphodiesterase 1): A Phylogenetic Perspective and Gene Expression Data Mining. | Mutti G et al. | — | 2020 | → |
| Prediction of Signed Protein Kinase Regulatory Circuits. | Invergo BM et al. | — | 2020 | → |
| Proteasomal Degradation of Proteins Is Important for the Proper Transcriptional Response to Sulfur Deficiency Conditions in Plants. | Wawrzyńska A et al. | — | 2020 | → |
| Quantile normalization of single-cell RNA-seq read counts without unique molecular identifiers. | Townes FW et al. | — | 2020 | → |
| Quantitative Proteomics of Human Heart Samples Collected <i>In Vivo</i> Reveal the Remodeled Protein Landscape of Dilated Left Atrium Without Atrial Fibrillation. | Linscheid N et al. | — | 2020 | → |
| Recent shifts in the genomic ancestry of Mexican Americans may alter the genetic architecture of biomedical traits. | Spear ML et al. | — | 2020 | → |
| Reduction of T-Box 15 gene expression in tumor tissue is a prognostic biomarker for patients with hepatocellular carcinoma. | Morine Y et al. | — | 2020 | → |
| Relationship closeness buffers the effects of perceived stress on transcriptomic indicators of cellular stress and biological aging marker p16<sup>INK4a</sup>. | Rentscher KE et al. | — | 2020 | → |
| Robust Summarization and Inference in Proteome-wide Label-free Quantification. | Sticker A et al. | — | 2020 | → |
| S3norm: simultaneous normalization of sequencing depth and signal-to-noise ratio in epigenomic data. | Xiang G et al. | — | 2020 | → |
| SECAT: Quantifying Protein Complex Dynamics across Cell States by Network-Centric Analysis of SEC-SWATH-MS Profiles. | Rosenberger G et al. | — | 2020 | → |
| Seminal Plasma Induces Overexpression of Genes Associated with Embryo Development and Implantation in Day-6 Porcine Blastocysts. | Martinez CA et al. | — | 2020 | → |
| Side-Population Trophoblasts Exhibit the Differentiation Potential of a Trophoblast Stem Cell Population, Persist to Term, and are Reduced in Fetal Growth Restriction. | Gamage TK et al. | — | 2020 | → |
| sigFeature: Novel Significant Feature Selection Method for Classification of Gene Expression Data Using Support Vector Machine and <i>t</i> Statistic. | Das P et al. | — | 2020 | → |
| Sleep disturbances and inflammatory gene expression among pregnant women: Differential responses by race. | Carroll JE et al. | — | 2020 | → |
| Spatiotemporal relationship between subthreshold amyloid accumulation and aerobic glycolysis in the human brain. | Goyal MS et al. | — | 2020 | → |
| Spontaneous intake of essential oils after a negative postnatal experience has long-term effects on blood transcriptome in chickens. | Foury A et al. | — | 2020 | → |
| Statins Reduce Intratumor Cholesterol Affecting Adrenocortical Cancer Growth. | Trotta F et al. | — | 2020 | → |
| Statistical Assessment of Depth Normalization for Small RNA Sequencing. | Qin LX et al. | — | 2020 | → |
| Synteny-Guided Resolution of Gene Trees Clarifies the Functional Impact of Whole-Genome Duplications. | Parey E et al. | — | 2020 | → |
| Systematic Evaluation of Normalization Methods for Glycomics Data Based on Performance of Network Inference. | Benedetti E et al. | — | 2020 | → |
| System biology analysis reveals the role of voltage-dependent anion channel in mitochondrial dysfunction during non-alcoholic fatty liver disease progression into hepatocellular carcinoma. | Zhu Y et al. | — | 2020 | → |
| Systems-level differential gene expression analysis reveals new genetic variants of oral cancer. | Abbas SZ et al. | — | 2020 | → |
| Tail-Robust Quantile Normalization. | Brombacher E et al. | — | 2020 | → |
| Targeting the ABC transporter ABCB5 sensitizes glioblastoma to temozolomide-induced apoptosis through a cell-cycle checkpoint regulation mechanism. | Lee CAA et al. | — | 2020 | → |
| Technique of Gene Expression Profiles Extraction Based on the Complex Use of Clustering and Classification Methods. | Babichev S et al. | — | 2020 | → |
| The gene expression network regulating queen brain remodeling after insemination and its parallel use in ants with reproductive workers. | Nagel M et al. | — | 2020 | → |
| The Genetic Dissection of <i>Ace2</i> Expression Variation in the Heart of Murine Genetic Reference Population. | Xu F et al. | — | 2020 | → |
| The genetic regulation of size variation in the transcriptome of the cerebrum in the chicken and its role in domestication and brain size evolution. | Höglund A et al. | — | 2020 | → |
| The pattern and prognostic relevance of immune activity scores and tumor-infiltrating immune cells in metastatic clear cell renal cell carcinoma: Evidence from multiple datasets. | Shi B et al. | — | 2020 | → |
| The Role of lncRNAs TAPIR-1 and -2 as Diagnostic Markers and Potential Therapeutic Targets in Prostate Cancer. | Friedrich M et al. | — | 2020 | → |
| Trajectory-based differential expression analysis for single-cell sequencing data. | Van den Berge K et al. | — | 2020 | → |
| Transcriptome changes and polymyxin resistance of acid-adapted Escherichia coli O157:H7 ATCC 43889. | Hwang D et al. | — | 2020 | → |
| Transcriptomic and Proteomic Analysis of Clear Cell Foci (CCF) in the Human Non-Cirrhotic Liver Identifies Several Differentially Expressed Genes and Proteins with Functions in Cancer Cell Biology and Glycogen Metabolism. | Metzendorf C et al. | — | 2020 | → |
| Transcriptomic identification of TMIGD1 and its relationship with the ileal epithelial cell differentiation in Crohn's disease. | Zabana Y et al. | — | 2020 | → |
| Transcriptomic signature of fasting in human adipose tissue. | Defour M et al. | — | 2020 | → |
| Tryptic digestion of human serum for proteomic mass spectrometry automated by centrifugal microfluidics. | Klatt JN et al. | — | 2020 | → |
| TWIST1 DNA methylation is a cell marker of airway and parenchymal lung fibroblasts that are differentially methylated in asthma. | Clifford RL et al. | — | 2020 | → |
| Two waves of transcriptomic changes in periovulatory human granulosa cells. | Poulsen LC et al. | — | 2020 | → |
| Unique microRNA alterations in hepatocellular carcinomas arising either spontaneously or due to chronic exposure to Ginkgo biloba extract (GBE) in B6C3F1/N mice. | Yamashita H et al. | — | 2020 | → |
| Urinary metabolic phenotyping for Alzheimer's disease. | Kurbatova N et al. | — | 2020 | → |
| Use of Metabolomic Profiling to Understand Variability in Adiposity Changes Following an Intentional Weight Loss Intervention in Older Adults. | Quillen EE et al. | — | 2020 | → |
| Utility of Proteomics in Emerging and Re-Emerging Infectious Diseases Caused by RNA Viruses. | Sperk M et al. | — | 2020 | → |