genes gene

Aliases

602 genes, functional elements, gene, gene-centric enrichment, gene-wide approach, genes, genetic factors, many of these genes, our genes, uncorrelated genes, unique genes

External links

NCBI Gene · Ensembl · GeneCards · UniProt

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Mentioned in (89)

Papers in which this entity is mentioned.

• Large-scale exome analyses reveal new rare variant contributions in amyotrophic lateral sclerosis. (2026)
• Integrative epigenetics and transcriptomics identify aging genes in human blood. (2026)
• Specificity, length and luck drive gene rankings in association studies. (2026)
• Analysis of multi-condition single-cell data with latent embedding multivariate regression. (2025)
• Massively parallel reporter assay investigates shared genetic variants of eight psychiatric disorders. (2025)
• High-Parameter Spatial Multi-Omics through Histology-Anchored Integration (2025)
• Deep-learning-based gene perturbation effect prediction does not yet outperform simple linear baselines. (2025)
• Transcription start sites experience a high influx of heritable variants fueled by early development. (2025)
• Global impact of unproductive splicing on human gene expression. (2024)
• Clinical, genomic, and neurophysiological correlates of lifetime suicide attempts among individuals with alcohol dependence. (2024)
• Transient loss of Polycomb components induces an epigenetic cancer fate. (2024)
• Single-cell RNA sequencing of peripheral blood links cell-type-specific regulation of splicing to autoimmune and inflammatory diseases. (2024)
• A DNA methylation atlas of normal human cell types. (2023)
• Gene-alcohol interactions in birth defects. (2023)
• Genetic Influences on the Developing Young Brain and Risk for Neuropsychiatric Disorders. (2023)
• Nanopore sequencing of RNA and cDNA molecules in . (2022)
• The Promise and Peril of Genetics. (2022)
• Variant interpretation using population databases: Lessons from gnomAD. (2022)
• Estimation of tumor cell total mRNA expression in 15 cancer types predicts disease progression. (2022)
• Fetal Alcohol Spectrum Disorders: Awareness to Insight in Just 50 Years. (2022)
• Gene-based polygenic risk scores analysis of alcohol use disorder in African Americans. (2022)
• Integrating molecular profiles into clinical frameworks through the Molecular Oncology Almanac to prospectively guide precision oncology. (2021)
• Prospective pan-cancer germline testing using MSK-IMPACT informs clinical translation in 751 patients with pediatric solid tumors. (2021)
• Alternative splicing: Human disease and quantitative analysis from high-throughput sequencing. (2021)
• BUTTERFLY: addressing the pooled amplification paradox with unique molecular identifiers in single-cell RNA-seq. (2021)
• Data structures based on -mers for querying large collections of sequencing data sets. (2021)
• Biologically informed deep neural network for prostate cancer discovery. (2021)
• Simultaneous single cell measurements of intranuclear proteins and gene expression (2021)
• DNA mismatch repair promotes APOBEC3-mediated diffuse hypermutation in human cancers. (2020)
• B cells and tertiary lymphoid structures promote immunotherapy response. (2020)
• ASEP: Gene-based detection of allele-specific expression across individuals in a population by RNA sequencing. (2020)
• The mutational constraint spectrum quantified from variation in 141,456 humans. (2020)
• Diverse noncoding mutations contribute to deregulation of cis-regulatory landscape in pediatric cancers. (2020)
• Detecting cell-type-specific allelic expression imbalance by integrative analysis of bulk and single-cell RNA sequencing data (2020)
• Comprehensive analysis of structural variants in breast cancer genomes using single-molecule sequencing. (2020)
• Transcriptomic signatures across human tissues identify functional rare genetic variation. (2020)
• The mutational constraint spectrum quantified from variation in 141,456 humans (2019)
• Genome-wide association study of alcohol consumption and use disorder in 274,424 individuals from multiple populations. (2019)
• Ethanol activates immune response in lymphoblastoid cells. (2019)
• Germline variants associated with leukocyte genes predict tumor recurrence in breast cancer patients. (2019)
• Genome-wide association analysis links multiple psychiatric liability genes to oscillatory brain activity. (2018)
• Enter the Matrix: Factorization Uncovers Knowledge from Omics. (2018)
• A fast detection of fusion genes from paired-end RNA-seq data. (2018)
• Comprehensive Characterization of Cancer Driver Genes and Mutations. (2018)
• A compendium of conserved cleavage and polyadenylation events in mammalian genes. (2018)
• RNentropy: an entropy-based tool for the detection of significant variation of gene expression across multiple RNA-Seq experiments. (2018)
• GAVIN: Gene-Aware Variant INterpretation for medical sequencing. (2017)
• Universal Patterns of Selection in Cancer and Somatic Tissues. (2017)
• Integrative clustering of multi-level 'omic data based on non-negative matrix factorization algorithm. (2017)
• The genomic landscape of balanced cytogenetic abnormalities associated with human congenital anomalies. (2017)
• CScape: a tool for predicting oncogenic single-point mutations in the cancer genome. (2017)
• Global analysis of somatic structural genomic alterations and their impact on gene expression in diverse human cancers. (2016)
• DGIdb 2.0: mining clinically relevant drug-gene interactions. (2016)
• The Genetics of Fetal Alcohol Spectrum Disorders. (2016)
• Tools and best practices for data processing in allelic expression analysis. (2015)
• Spatial reconstruction of single-cell gene expression data. (2015)
• The human gene damage index as a gene-level approach to prioritizing exome variants. (2015)
• A global reference for human genetic variation. (2015)
• Candidate gene-environment interaction research: reflections and recommendations. (2015)
• Germline Mutations in Predisposition Genes in Pediatric Cancer. (2015)
• Systematic pan-cancer analysis of tumour purity. (2015)
• MBASED: allele-specific expression detection in cancer tissues and cell lines. (2014)
• Transcriptome sequencing of a large human family identifies the impact of rare noncoding variants. (2014)
• Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. (2014)
• Dynamic analyses of alternative polyadenylation from RNA-seq reveal a 3'-UTR landscape across seven tumour types. (2014)
• Normalization of RNA-seq data using factor analysis of control genes or samples. (2014)
• Recurrent somatic structural variations contribute to tumorigenesis in pediatric osteosarcoma. (2014)
• Prioritizing Potentially Druggable Mutations with dGene: An Annotation Tool for Cancer Genome Sequencing Data. (2013)
• Somatic rearrangements across cancer reveal classes of samples with distinct patterns of DNA breakage and rearrangement-induced hypermutability. (2013)
• ACMG recommendations for reporting of incidental findings in clinical exome and genome sequencing. (2013)
• A simple consensus approach improves somatic mutation prediction accuracy. (2013)
• ACMG clinical laboratory standards for next-generation sequencing. (2013)
• DGIdb: mining the druggable genome. (2013)
• Computational approaches to identify functional genetic variants in cancer genomes. (2013)
• Genic intolerance to functional variation and the interpretation of personal genomes. (2013)
• Amyloid pathway-based candidate gene analysis of [(11)C]PiB-PET in the Alzheimer's Disease Neuroimaging Initiative (ADNI) cohort. (2012)
• Circular RNAs are the predominant transcript isoform from hundreds of human genes in diverse cell types. (2012)
• Integrative analysis reveals relationships of genetic and epigenetic alterations in osteosarcoma. (2012)
• Differential expression in RNA-seq: a matter of depth. (2011)
• Long pre-mRNA depletion and RNA missplicing contribute to neuronal vulnerability from loss of TDP-43. (2011)
• Linkage analysis merging replicate phenotypes: an application to three quantitative phenotypes in two African samples. (2011)
• Gene-environment interaction in psychological traits and disorders. (2011)
• Genomic regions identified by overlapping clusters of nominally-positive SNPs from genome-wide studies of alcohol and illegal substance dependence. (2011)
• A flexible R package for nonnegative matrix factorization. (2010)
• Evidence for genes on chromosome 2 contributing to alcohol dependence with conduct disorder and suicide attempts. (2010)
• Association of single nucleotide polymorphisms in a glutamate receptor gene (GRM8) with theta power of event-related oscillations and alcohol dependence. (2009)
• Fewer permutations, more accurate P-values. (2009)
• Genome level analysis of rice mRNA 3'-end processing signals and alternative polyadenylation. (2008)
• Co-occurring risk factors for alcohol dependence and habitual smoking: update on findings from the Collaborative Study on the Genetics of Alcoholism. (2006)

Merged raw entities (9)

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