genes gene

Aliases

602 genes, functional elements, gene, gene-centric enrichment, gene-wide approach, genes, genetic factors, many of these genes, our genes, uncorrelated genes, unique genes

External links

NCBI Gene · Ensembl · GeneCards · UniProt

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Mentioned in (177)

Papers in which this entity is mentioned.

• Large-scale exome analyses reveal new rare variant contributions in amyotrophic lateral sclerosis. (2026)
• Integrative epigenetics and transcriptomics identify aging genes in human blood. (2026)
• Specificity, length and luck drive gene rankings in association studies. (2026)
• Analysis of multi-condition single-cell data with latent embedding multivariate regression. (2025)
• Massively parallel reporter assay investigates shared genetic variants of eight psychiatric disorders. (2025)
• High-Parameter Spatial Multi-Omics through Histology-Anchored Integration (2025)
• Deep-learning-based gene perturbation effect prediction does not yet outperform simple linear baselines. (2025)
• Transcription start sites experience a high influx of heritable variants fueled by early development. (2025)
• Global impact of unproductive splicing on human gene expression. (2024)
• Clinical, genomic, and neurophysiological correlates of lifetime suicide attempts among individuals with alcohol dependence. (2024)
• Transient loss of Polycomb components induces an epigenetic cancer fate. (2024)
• Single-cell RNA sequencing of peripheral blood links cell-type-specific regulation of splicing to autoimmune and inflammatory diseases. (2024)
• Emotion, motivation, decision-making, the orbitofrontal cortex, anterior cingulate cortex, and the amygdala. (2023)
• Effect of schizophrenia common variants on infant brain volumes: cross-sectional study in 207 term neonates in developing Human Connectome Project. (2023)
• A DNA methylation atlas of normal human cell types. (2023)
• Gene-alcohol interactions in birth defects. (2023)
• Genetic Influences on the Developing Young Brain and Risk for Neuropsychiatric Disorders. (2023)
• Meta-analysis of epigenome-wide association studies in newborns and children show widespread sex differences in blood DNA methylation. (2022)
• Nanopore sequencing of RNA and cDNA molecules in . (2022)
• A saturated map of common genetic variants associated with human height. (2022)
• The Promise and Peril of Genetics. (2022)
• Variant interpretation using population databases: Lessons from gnomAD. (2022)
• Estimation of tumor cell total mRNA expression in 15 cancer types predicts disease progression. (2022)
• Expansion of Schizophrenia Gene Network Knowledge Using Machine Learning Selected Signals From Dorsolateral Prefrontal Cortex and Amygdala RNA-seq Data. (2022)
• Fetal Alcohol Spectrum Disorders: Awareness to Insight in Just 50 Years. (2022)
• Gene-based polygenic risk scores analysis of alcohol use disorder in African Americans. (2022)
• Genetic variants associated with longitudinal changes in brain structure across the lifespan. (2022)
• Integrating molecular profiles into clinical frameworks through the Molecular Oncology Almanac to prospectively guide precision oncology. (2021)
• Prospective pan-cancer germline testing using MSK-IMPACT informs clinical translation in 751 patients with pediatric solid tumors. (2021)
• Alternative splicing: Human disease and quantitative analysis from high-throughput sequencing. (2021)
• BUTTERFLY: addressing the pooled amplification paradox with unique molecular identifiers in single-cell RNA-seq. (2021)
• Large-scale cis- and trans-eQTL analyses identify thousands of genetic loci and polygenic scores that regulate blood gene expression. (2021)
• Data structures based on -mers for querying large collections of sequencing data sets. (2021)
• Biologically informed deep neural network for prostate cancer discovery. (2021)
• Simultaneous single cell measurements of intranuclear proteins and gene expression (2021)
• DNA mismatch repair promotes APOBEC3-mediated diffuse hypermutation in human cancers. (2020)
• B cells and tertiary lymphoid structures promote immunotherapy response. (2020)
• ASEP: Gene-based detection of allele-specific expression across individuals in a population by RNA sequencing. (2020)
• The mutational constraint spectrum quantified from variation in 141,456 humans. (2020)
• Diverse noncoding mutations contribute to deregulation of cis-regulatory landscape in pediatric cancers. (2020)
• Gestational diabetes induces behavioral and brain gene transcription dysregulation in adult offspring. (2020)
• Detecting cell-type-specific allelic expression imbalance by integrative analysis of bulk and single-cell RNA sequencing data (2020)
• Comprehensive analysis of structural variants in breast cancer genomes using single-molecule sequencing. (2020)
• Transcriptomic signatures across human tissues identify functional rare genetic variation. (2020)
• The mutational constraint spectrum quantified from variation in 141,456 humans (2019)
• Genome-wide association study of alcohol consumption and use disorder in 274,424 individuals from multiple populations. (2019)
• Ethanol activates immune response in lymphoblastoid cells. (2019)
• Germline variants associated with leukocyte genes predict tumor recurrence in breast cancer patients. (2019)
• Genome-wide association analysis links multiple psychiatric liability genes to oscillatory brain activity. (2018)
• Enter the Matrix: Factorization Uncovers Knowledge from Omics. (2018)
• A fast detection of fusion genes from paired-end RNA-seq data. (2018)
• Comprehensive Characterization of Cancer Driver Genes and Mutations. (2018)
• A compendium of conserved cleavage and polyadenylation events in mammalian genes. (2018)
• RNentropy: an entropy-based tool for the detection of significant variation of gene expression across multiple RNA-Seq experiments. (2018)
• Incorporating Functional Genomic Information to Enhance Polygenic Signal and Identify Variants Involved in Gene-by-Environment Interaction for Young Adult Alcohol Problems. (2018)
• The development of brain white matter microstructure. (2018)
• Identification of novel candidate disease genes from de novo exonic copy number variants. (2017)
• GAVIN: Gene-Aware Variant INterpretation for medical sequencing. (2017)
• Constrained release of lamina-associated enhancers and genes from the nuclear envelope during T-cell activation facilitates their association in chromosome compartments. (2017)
• Universal Patterns of Selection in Cancer and Somatic Tissues. (2017)
• Genetic effects on gene expression across human tissues. (2017)
• Network analysis identifies chromosome intermingling regions as regulatory hotspots for transcription. (2017)
• Effects of selection for ethanol preference on gene expression in the nucleus accumbens of HS-CC mice. (2017)
• Integrative clustering of multi-level 'omic data based on non-negative matrix factorization algorithm. (2017)
• The genomic landscape of balanced cytogenetic abnormalities associated with human congenital anomalies. (2017)
• A Next Generation Connectivity Map: L1000 Platform and the First 1,000,000 Profiles. (2017)
• CScape: a tool for predicting oncogenic single-point mutations in the cancer genome. (2017)
• Sex differences in DNA methylation of the cord blood are related to sex-bias psychiatric diseases. (2017)
• DNA replication timing during development anticipates transcriptional programs and parallels enhancer activation. (2017)
• Single-Cell Profiling of an In Vitro Model of Human Interneuron Development Reveals Temporal Dynamics of Cell Type Production and Maturation. (2017)
• Translating genome-wide association findings into new therapeutics for psychiatry. (2016)
• Global analysis of somatic structural genomic alterations and their impact on gene expression in diverse human cancers. (2016)
• Alteration of Gene Expression, DNA Methylation, and Histone Methylation in Free Radical Scavenging Networks in Adult Mouse Hippocampus following Fetal Alcohol Exposure. (2016)
• Enacting the molecular imperative: How gene-environment interaction research links bodies and environments in the post-genomic age. (2016)
• DNA methylation signature of human fetal alcohol spectrum disorder. (2016)
• Nicotine Exposure During Pregnancy Results in Persistent Midline Epithelial Seam With Improper Palatal Fusion. (2016)
• Possible relationship between common genetic variation and white matter development in a pilot study of preterm infants. (2016)
• DGIdb 2.0: mining clinically relevant drug-gene interactions. (2016)
• The Genetics of Fetal Alcohol Spectrum Disorders. (2016)
• Tools and best practices for data processing in allelic expression analysis. (2015)
• HTSeq--a Python framework to work with high-throughput sequencing data. (2015)
• An introductory review of parallel independent component analysis (p-ICA) and a guide to applying p-ICA to genetic data and imaging phenotypes to identify disease-associated biological pathways and systems in common complex disorders. (2015)
• Genome-Wide Meta-Analysis of Longitudinal Alcohol Consumption Across Youth and Early Adulthood. (2015)
• Spatial reconstruction of single-cell gene expression data. (2015)
• The human gene damage index as a gene-level approach to prioritizing exome variants. (2015)
• A global reference for human genetic variation. (2015)
• Candidate gene-environment interaction research: reflections and recommendations. (2015)
• Genomic influences on alcohol problems in a population-based sample of young adults. (2015)
• Fetal exposure to maternal depressive symptoms is associated with cortical thickness in late childhood. (2015)
• Early-life exposure to the SSRI paroxetine exacerbates depression-like behavior in anxiety/depression-prone rats. (2015)
• Genetic influences on pubertal development and links to behavior problems. (2015)
• Germline Mutations in Predisposition Genes in Pediatric Cancer. (2015)
• Systematic pan-cancer analysis of tumour purity. (2015)
• Quantitative tract-based white matter heritability in twin neonates. (2015)
• A global reference for human genetic variation. (2015)
• Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. (2014)
• MBASED: allele-specific expression detection in cancer tissues and cell lines. (2014)
• Is the gene-environment interaction paradigm relevant to genome-wide studies? The case of education and body mass index. (2014)
• The ENIGMA Consortium: large-scale collaborative analyses of neuroimaging and genetic data. (2014)
• Transcriptome sequencing of a large human family identifies the impact of rare noncoding variants. (2014)
• Distinct structural transitions of chromatin topological domains correlate with coordinated hormone-induced gene regulation. (2014)
• Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. (2014)
• Effects of Acute Prenatal Exposure to Ethanol on microRNA Expression are Ameliorated by Social Enrichment. (2014)
• Dynamic analyses of alternative polyadenylation from RNA-seq reveal a 3'-UTR landscape across seven tumour types. (2014)
• Normalization of RNA-seq data using factor analysis of control genes or samples. (2014)
• Heritability and genomics of gene expression in peripheral blood. (2014)
• Recurrent somatic structural variations contribute to tumorigenesis in pediatric osteosarcoma. (2014)
• Heritability and molecular-genetic basis of resting EEG activity: a genome-wide association study. (2014)
• Genetic influences on brain developmental trajectories on neuroimaging studies: from infancy to young adulthood. (2014)
• In search of rare variants: preliminary results from whole genome sequencing of 1,325 individuals with psychophysiological endophenotypes. (2014)
• Temporal specification and bilaterality of human neocortical topographic gene expression. (2014)
• Global epigenomic reconfiguration during mammalian brain development. (2013)
• Prioritizing Potentially Druggable Mutations with dGene: An Annotation Tool for Cancer Genome Sequencing Data. (2013)
• Somatic rearrangements across cancer reveal classes of samples with distinct patterns of DNA breakage and rearrangement-induced hypermutability. (2013)
• Neurodevelopmental alcohol exposure elicits long-term changes to gene expression that alter distinct molecular pathways dependent on timing of exposure. (2013)
• ACMG recommendations for reporting of incidental findings in clinical exome and genome sequencing. (2013)
• A simple consensus approach improves somatic mutation prediction accuracy. (2013)
• Positively correlated miRNA-mRNA regulatory networks in mouse frontal cortex during early stages of alcohol dependence. (2013)
• ACMG clinical laboratory standards for next-generation sequencing. (2013)
• Large-scale genotyping identifies 41 new loci associated with breast cancer risk. (2013)
• A comparative phenotypic and genomic analysis of C57BL/6J and C57BL/6N mouse strains. (2013)
• A cross-platform analysis of 14,177 expression quantitative trait loci derived from lymphoblastoid cell lines. (2013)
• DGIdb: mining the druggable genome. (2013)
• Genes of experience: explaining the heritability of putative environmental variables through their association with behavioural and emotional traits. (2013)
• Hand in glove: brain and skull in development and dysmorphogenesis. (2013)
• Computational approaches to identify functional genetic variants in cancer genomes. (2013)
• Genic intolerance to functional variation and the interpretation of personal genomes. (2013)
• The Genomic Revolution and Beliefs about Essential Racial Differences: A Backdoor to Eugenics? (2013)
• 450K epigenome-wide scan identifies differential DNA methylation in newborns related to maternal smoking during pregnancy. (2012)
• Amyloid pathway-based candidate gene analysis of [(11)C]PiB-PET in the Alzheimer's Disease Neuroimaging Initiative (ADNI) cohort. (2012)
• The genetics of alcohol dependence: advancing towards systems-based approaches. (2012)
• White matter development in early puberty: a longitudinal volumetric and diffusion tensor imaging twin study. (2012)
• Circular RNAs are the predominant transcript isoform from hundreds of human genes in diverse cell types. (2012)
• Integrative analysis reveals relationships of genetic and epigenetic alterations in osteosarcoma. (2012)
• CNVs: harbingers of a rare variant revolution in psychiatric genetics. (2012)
• Pathway analysis of genomic data: concepts, methods, and prospects for future development. (2012)
• Evolution and functional impact of rare coding variation from deep sequencing of human exomes. (2012)
• The impact of gene-environment interaction on alcohol use disorders. (2012)
• Gene expression changes in C57BL/6J and DBA/2J mice following prenatal alcohol exposure. (2012)
• Differential expression in RNA-seq: a matter of depth. (2011)
• Intermediate phenotypes in psychiatric disorders. (2011)
• Long pre-mRNA depletion and RNA missplicing contribute to neuronal vulnerability from loss of TDP-43. (2011)
• Psychiatric 'diseases' versus behavioral disorders and degree of genetic influence. (2011)
• Linkage analysis merging replicate phenotypes: an application to three quantitative phenotypes in two African samples. (2011)
• Gene-environment interaction in psychological traits and disorders. (2011)
• Human aggression across the lifespan: genetic propensities and environmental moderators. (2011)
• The neuroscience of suicidal behaviors: what can we expect from endophenotype strategies? (2011)
• Trans-eQTLs reveal that independent genetic variants associated with a complex phenotype converge on intermediate genes, with a major role for the HLA. (2011)
• Alteration of gene expression by alcohol exposure at early neurulation. (2011)
• Genomic regions identified by overlapping clusters of nominally-positive SNPs from genome-wide studies of alcohol and illegal substance dependence. (2011)
• Genome wide association for addiction: replicated results and comparisons of two analytic approaches. (2010)
• A flexible R package for nonnegative matrix factorization. (2010)
• Molecular maps of the reorganization of genome-nuclear lamina interactions during differentiation. (2010)
• Cortical thickness or grey matter volume? The importance of selecting the phenotype for imaging genetics studies. (2010)
• Convergence of genetic findings for nicotine dependence and smoking related diseases with chromosome 15q24-25. (2010)
• Liver and adipose expression associated SNPs are enriched for association to type 2 diabetes. (2010)
• BEDTools: a flexible suite of utilities for comparing genomic features. (2010)
• Genetics and beyond--the transcriptome of human monocytes and disease susceptibility. (2010)
• Evidence for genes on chromosome 2 contributing to alcohol dependence with conduct disorder and suicide attempts. (2010)
• Common genetic contributions to alcohol and cannabis use and dependence symptomatology. (2010)
• A groupwise association test for rare mutations using a weighted sum statistic. (2009)
• Association of single nucleotide polymorphisms in a glutamate receptor gene (GRM8) with theta power of event-related oscillations and alcohol dependence. (2009)
• Alcohol exposure alters DNA methylation profiles in mouse embryos at early neurulation. (2009)
• Dramatic increase in heritability of cognitive development from early to middle childhood: an 8-year longitudinal study of 8,700 pairs of twins. (2009)
• Developmental origins of health and disease: brief history of the approach and current focus on epigenetic mechanisms. (2009)
• The future of genetics in psychology and psychiatry: microarrays, genome-wide association, and non-coding RNA. (2009)
• Fewer permutations, more accurate P-values. (2009)
• Gene-wide analyses of genome-wide association data sets: evidence for multiple common risk alleles for schizophrenia and bipolar disorder and for overlap in genetic risk. (2009)
• Common and rare variants in multifactorial susceptibility to common diseases. (2008)
• Genome level analysis of rice mRNA 3'-end processing signals and alternative polyadenylation. (2008)
• Identification of novel bone-specific molecular targets of binge alcohol and ibandronate by transcriptome analysis. (2008)
• Genetic approaches to addiction: genes and alcohol. (2008)
• FASTSNP: an always up-to-date and extendable service for SNP function analysis and prioritization. (2006)
• Co-occurring risk factors for alcohol dependence and habitual smoking: update on findings from the Collaborative Study on the Genetics of Alcoholism. (2006)
• SNPs3D: candidate gene and SNP selection for association studies. (2006)
• The zebrafish gene map defines ancestral vertebrate chromosomes. (2005)

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