HapMap cohort

Aliases

203 HapMap individuals, 270 unrelated HapMap individuals, Hap Map, HapMap, HapMap 2, HapMap 3 reference panel, HapMap III, HapMap LD based map, HapMap SNP panel, HapMap data track, HapMap phase II, HapMap project, HapMap2, Hapmap, Hapmap 3 annotated SNPs, Hapmap CEPH, International HapMap Consortium, International HapMap Project, Phase II HapMap, four core HapMap samples, reference samples, six different populations

Related entities (5)

Mentioned in (42)

Papers in which this entity is mentioned.

• Genome-wide analyses identify 30 loci associated with obsessive-compulsive disorder. (2025)
• MUSSEL: Enhanced Bayesian polygenic risk prediction leveraging information across multiple ancestry groups. (2024)
• Item-Level Genome-Wide Association Study of the Alcohol Use Disorders Identification Test in Three Population-Based Cohorts. (2022)
• Principal Component Analyses (PCA)-based findings in population genetic studies are highly biased and must be reevaluated. (2022)
• Whole-genome analysis reveals the contribution of non-coding de novo transposon insertions to autism spectrum disorder. (2021)
• Genome-wide cell-free DNA mutational integration enables ultra-sensitive cancer monitoring. (2020)
• Genome-wide association study of alcohol consumption and use disorder in 274,424 individuals from multiple populations. (2019)
• Genome-wide association analysis links multiple psychiatric liability genes to oscillatory brain activity. (2018)
• Fast and accurate HLA typing from short-read next-generation sequence data with xHLA. (2017)
• PGBD5 promotes site-specific oncogenic mutations in human tumors. (2017)
• Eigenanalysis of SNP data with an identity by descent interpretation. (2016)
• GeneiASE: Detection of condition-dependent and static allele-specific expression from RNA-seq data without haplotype information. (2016)
• Association of germline variants in the APOBEC3 region with cancer risk and enrichment with APOBEC-signature mutations in tumors. (2016)
• High-Accuracy HLA Type Inference from Whole-Genome Sequencing Data Using Population Reference Graphs. (2016)
• A genomic case study of desmoplastic small round cell tumor: comprehensive analysis reveals insights into potential therapeutic targets and development of a monitoring tool for a rare and aggressive disease. (2016)
• FACETS: allele-specific copy number and clonal heterogeneity analysis tool for high-throughput DNA sequencing. (2016)
• A gene-based association method for mapping traits using reference transcriptome data. (2015)
• A global reference for human genetic variation. (2015)
• HLAreporter: a tool for HLA typing from next generation sequencing data. (2015)
• Reconstructing A/B compartments as revealed by Hi-C using long-range correlations in epigenetic data. (2015)
• Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans. (2015)
• MBASED: allele-specific expression detection in cancer tissues and cell lines. (2014)
• Hidden Markov Model-Based CNV Detection Algorithms for Illumina Genotyping Microarrays. (2014)
• A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium. (2014)
• Inference of high resolution HLA types using genome-wide RNA or DNA sequencing reads. (2014)
• OptiType: precision HLA typing from next-generation sequencing data. (2014)
• A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks. (2013)
• ACMG clinical laboratory standards for next-generation sequencing. (2013)
• HLA typing from 1000 genomes whole genome and whole exome illumina data. (2013)
• A comparative analysis of algorithms for somatic SNV detection in cancer. (2013)
• High-throughput detection of actionable genomic alterations in clinical tumor samples by targeted, massively parallel sequencing. (2012)
• cn.MOPS: mixture of Poissons for discovering copy number variations in next-generation sequencing data with a low false discovery rate. (2012)
• Longevity candidate genes and their association with personality traits in the elderly. (2012)
• HLA typing from RNA-Seq sequence reads. (2012)
• Efficient counting of k-mers in DNA sequences using a bloom filter. (2011)
• Integrative analysis of the melanoma transcriptome. (2010)
• A new statistic to evaluate imputation reliability. (2010)
• Tackling the widespread and critical impact of batch effects in high-throughput data. (2010)
• Copy-number-variation and copy-number-alteration region detection by cumulative plots. (2009)
• Cancer-specific high-throughput annotation of somatic mutations: computational prediction of driver missense mutations. (2009)
• PennCNV: an integrated hidden Markov model designed for high-resolution copy number variation detection in whole-genome SNP genotyping data. (2007)
• Accurate and reliable high-throughput detection of copy number variation in the human genome. (2006)

Merged raw entities (25)

All extracted name/type variants the normalize job merged into this entity. Use this to spot wrong merges, or aliases that should be split off.