HapMap cohort

Aliases

203 HapMap individuals, 270 unrelated HapMap individuals, Hap Map, HapMap, HapMap 2, HapMap 3 reference panel, HapMap III, HapMap LD based map, HapMap SNP panel, HapMap data track, HapMap phase II, HapMap project, HapMap2, Hapmap, Hapmap 3 annotated SNPs, Hapmap CEPH, International HapMap Consortium, International HapMap Project, Phase II HapMap, four core HapMap samples, reference samples, six different populations

Related entities (40)

Mentioned in (101)

Papers in which this entity is mentioned.

• Genome-wide analyses identify 30 loci associated with obsessive-compulsive disorder. (2025)
• MUSSEL: Enhanced Bayesian polygenic risk prediction leveraging information across multiple ancestry groups. (2024)
• Polygenic prediction across populations is influenced by ancestry, genetic architecture, and methodology. (2023)
• Item-Level Genome-Wide Association Study of the Alcohol Use Disorders Identification Test in Three Population-Based Cohorts. (2022)
• Principal Component Analyses (PCA)-based findings in population genetic studies are highly biased and must be reevaluated. (2022)
• Whole-genome analysis reveals the contribution of non-coding de novo transposon insertions to autism spectrum disorder. (2021)
• Genome-wide cell-free DNA mutational integration enables ultra-sensitive cancer monitoring. (2020)
• Genome-wide association study of alcohol consumption and use disorder in 274,424 individuals from multiple populations. (2019)
• Genome-wide association analysis links multiple psychiatric liability genes to oscillatory brain activity. (2018)
• Fast and accurate HLA typing from short-read next-generation sequence data with xHLA. (2017)
• Genetic studies of alcohol dependence in the context of the addiction cycle. (2017)
• Review: Pharmacogenetics of alcoholism treatment: Implications of ethnic diversity. (2017)
• Genetic loci associated with chronic obstructive pulmonary disease overlap with loci for lung function and pulmonary fibrosis. (2017)
• PGBD5 promotes site-specific oncogenic mutations in human tumors. (2017)
• Eigenanalysis of SNP data with an identity by descent interpretation. (2016)
• GeneiASE: Detection of condition-dependent and static allele-specific expression from RNA-seq data without haplotype information. (2016)
• Association of germline variants in the APOBEC3 region with cancer risk and enrichment with APOBEC-signature mutations in tumors. (2016)
• High-Accuracy HLA Type Inference from Whole-Genome Sequencing Data Using Population Reference Graphs. (2016)
• A genomic case study of desmoplastic small round cell tumor: comprehensive analysis reveals insights into potential therapeutic targets and development of a monitoring tool for a rare and aggressive disease. (2016)
• DNA methylation signature of human fetal alcohol spectrum disorder. (2016)
• FACETS: allele-specific copy number and clonal heterogeneity analysis tool for high-throughput DNA sequencing. (2016)
• A gene-based association method for mapping traits using reference transcriptome data. (2015)
• A global reference for human genetic variation. (2015)
• HLAreporter: a tool for HLA typing from next generation sequencing data. (2015)
• Reconstructing A/B compartments as revealed by Hi-C using long-range correlations in epigenetic data. (2015)
• Genome-wide association study of nicotine dependence in American populations: identification of novel risk loci in both African-Americans and European-Americans. (2015)
• MBASED: allele-specific expression detection in cancer tissues and cell lines. (2014)
• Hidden Markov Model-Based CNV Detection Algorithms for Illumina Genotyping Microarrays. (2014)
• A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium. (2014)
• Inference of high resolution HLA types using genome-wide RNA or DNA sequencing reads. (2014)
• Maternal obesity and tobacco use modify the impact of genetic variants on the occurrence of conotruncal heart defects. (2014)
• OptiType: precision HLA typing from next-generation sequencing data. (2014)
• Heritability and molecular-genetic basis of resting EEG activity: a genome-wide association study. (2014)
• Genome-wide association discoveries of alcohol dependence. (2014)
• Identification of CHRNA5 rare variants in African-American heavy smokers. (2014)
• A general approach for haplotype phasing across the full spectrum of relatedness. (2014)
• Candidate gene association studies: a comprehensive guide to useful in silico tools. (2013)
• Nominal association with CHRNA4 variants and nicotine dependence. (2013)
• A mega-analysis of genome-wide association studies for major depressive disorder. (2013)
• Distinct loci in the CHRNA5/CHRNA3/CHRNB4 gene cluster are associated with onset of regular smoking. (2013)
• A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks. (2013)
• ACMG clinical laboratory standards for next-generation sequencing. (2013)
• Large-scale genotyping identifies 41 new loci associated with breast cancer risk. (2013)
• HLA typing from 1000 genomes whole genome and whole exome illumina data. (2013)
• A comparative analysis of algorithms for somatic SNV detection in cancer. (2013)
• A cross-platform analysis of 14,177 expression quantitative trait loci derived from lymphoblastoid cell lines. (2013)
• The Growing Importance of CNVs: New Insights for Detection and Clinical Interpretation. (2013)
• Association of PER2 genotype and stressful life events with alcohol drinking in young adults. (2013)
• Nicotinic acetylcholine receptor variation and response to smoking cessation therapies. (2013)
• The Genomic Revolution and Beliefs about Essential Racial Differences: A Backdoor to Eugenics? (2013)
• Delta and kappa opioid receptor polymorphisms influence the effects of naltrexone on subjective responses to alcohol. (2012)
• Population-specificity of human DNA methylation. (2012)
• High-throughput detection of actionable genomic alterations in clinical tumor samples by targeted, massively parallel sequencing. (2012)
• cn.MOPS: mixture of Poissons for discovering copy number variations in next-generation sequencing data with a low false discovery rate. (2012)
• Longevity candidate genes and their association with personality traits in the elderly. (2012)
• Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture. (2012)
• HLA typing from RNA-Seq sequence reads. (2012)
• Efficient counting of k-mers in DNA sequences using a bloom filter. (2011)
• A comparison of approaches to account for uncertainty in analysis of imputed genotypes. (2011)
• Association of CHRNA4 polymorphisms with smoking behavior in two populations. (2011)
• Meta-analysis and genome-wide interpretation of genetic susceptibility to drug addiction. (2011)
• Uncovering hidden variance: pair-wise SNP analysis accounts for additional variance in nicotine dependence. (2011)
• A genome-wide association study of upper aerodigestive tract cancers conducted within the INHANCE consortium. (2011)
• Novel loci for major depression identified by genome-wide association study of Sequenced Treatment Alternatives to Relieve Depression and meta-analysis of three studies. (2011)
• Gene set analysis of genome-wide association studies: methodological issues and perspectives. (2011)
• The investigation into CYP2E1 in relation to the level of response to alcohol through a combination of linkage and association analysis. (2011)
• Mirror extreme BMI phenotypes associated with gene dosage at the chromosome 16p11.2 locus. (2011)
• Distribution of allele frequencies and effect sizes and their interrelationships for common genetic susceptibility variants. (2011)
• The neuronal transporter gene SLC6A15 confers risk to major depression. (2011)
• LocusZoom: regional visualization of genome-wide association scan results. (2010)
• Genome wide association for addiction: replicated results and comparisons of two analytic approaches. (2010)
• Genetics of psychiatric disorders methods: molecular approaches. (2010)
• Integrative analysis of the melanoma transcriptome. (2010)
• Replication of association between schizophrenia and ZNF804A in the Irish Case-Control Study of Schizophrenia sample. (2010)
• LocusZoom: regional visualization of genome-wide association scan results. (2010)
• Association analyses of 249,796 individuals reveal 18 new loci associated with body mass index. (2010)
• Discovering genetic ancestry using spectral graph theory. (2010)
• A risk allele for focal segmental glomerulosclerosis in African Americans is located within a region containing APOL1 and MYH9. (2010)
• Genome-wide association studies in diverse populations. (2010)
• A new statistic to evaluate imputation reliability. (2010)
• Tackling the widespread and critical impact of batch effects in high-throughput data. (2010)
• SNPinfo: integrating GWAS and candidate gene information into functional SNP selection for genetic association studies. (2009)
• Genetic structure of Europeans: a view from the North-East. (2009)
• Ancestry informative marker sets for determining continental origin and admixture proportions in common populations in America. (2009)
• Six new loci associated with body mass index highlight a neuronal influence on body weight regulation. (2009)
• Variants in nicotinic acetylcholine receptors alpha5 and alpha3 increase risks to nicotine dependence. (2009)
• Genome-wide association for major depressive disorder: a possible role for the presynaptic protein piccolo. (2009)
• Meta-analysis in genome-wide association studies. (2009)
• Associations of glutamate decarboxylase genes with initial sensitivity and age-at-onset of alcohol dependence in the Irish Affected Sib Pair Study of Alcohol Dependence. (2009)
• Genomewide association studies: history, rationale, and prospects for psychiatric disorders. (2009)
• Genomewide association studies and human disease. (2009)
• Genome-wide association studies in ADHD. (2009)
• Marker selection for genetic case-control association studies. (2009)
• Copy-number-variation and copy-number-alteration region detection by cumulative plots. (2009)
• Cancer-specific high-throughput annotation of somatic mutations: computational prediction of driver missense mutations. (2009)
• Nicotinic acetylcholine receptor beta2 subunit gene implicated in a systems-based candidate gene study of smoking cessation. (2008)
• Association study of Wnt signaling pathway genes in bipolar disorder. (2008)
• PennCNV: an integrated hidden Markov model designed for high-resolution copy number variation detection in whole-genome SNP genotyping data. (2007)
• Identification of risk-related haplotypes with the use of multiple SNPs from nuclear families. (2007)
• Accurate and reliable high-throughput detection of copy number variation in the human genome. (2006)
• FASTSNP: an always up-to-date and extendable service for SNP function analysis and prioritization. (2006)

Merged raw entities (25)

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