HapMap3 cohort
Evidence from:
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Related entities (22)
| Subject | Relation | Object | p-value | Evidence |
|---|---|---|---|---|
| associated SNPs | associated_with | HapMap3 | — | 1 |
| associated SNPs | interacts_with | HapMap3 | — | 2 |
| HapMap3 | associated_with | 1000 Genomes Project | — | 1 |
| HapMap3 | interacts_with | 1000 Genomes Project | — | 1 |
| HapMap3 | interacts_with | Affymetrix | — | 1 |
| HapMap3 | associated_with | AFR | — | 1 |
| HapMap3 | associated_with | anxiety | — | 1 |
| HapMap3 | associated_with | associated SNPs | — | 1 |
| HapMap3 | associated_with | bipolar disorder | — | 1 |
| HapMap3 | interacts_with | dbSNP | — | 1 |
| HapMap3 | associated_with | EUR | — | 1 |
| HapMap3 | associated_with | Europeans | — | 1 |
| HapMap3 | interacts_with | GTEx v7 | — | 1 |
| HapMap3 | associated_with | lateral amygdala | — | 1 |
| HapMap3 | associated_with | mood disorders | — | 1 |
| HapMap3 | associated_with | neuroticism | — | 1 |
| HapMap3 | associated_with | rare variant | — | 1 |
| HapMap3 | associated_with | schizophrenia | — | 1 |
| PGC | associated_with | HapMap3 | — | 1 |
| SNP | associated_with | HapMap3 | — | 2 |
| Structure | interacts_with | HapMap3 | — | 1 |
| UK Biobank | associated_with | HapMap3 | — | 1 |
Mentioned in (53)
Papers in which this entity is mentioned.
- Specificity, length and luck drive gene rankings in association studies. (2026)
- MUSSEL: Enhanced Bayesian polygenic risk prediction leveraging information across multiple ancestry groups. (2024)
- Yield of genetic association signals from genomes, exomes and imputation in the UK Biobank. (2024)
- Multiomic prioritisation of risk genes for anorexia nervosa. (2023)
- Pervasive Downward Bias in Estimates of Liability-Scale Heritability in Genome-wide Association Study Meta-analysis: A Simple Solution. (2023)
- Multi-ancestry study of the genetics of problematic alcohol use in over 1 million individuals. (2023)
- Polygenic prediction across populations is influenced by ancestry, genetic architecture, and methodology. (2023)
- Genetic architecture of 11 major psychiatric disorders at biobehavioral, functional genomic and molecular genetic levels of analysis. (2022)
- Cross-tissue transcriptome-wide association studies identify susceptibility genes shared between schizophrenia and inflammatory bowel disease. (2022)
- Genetic variants associated with longitudinal changes in brain structure across the lifespan. (2022)
- Genome-wide meta-analysis of problematic alcohol use in 435,563 individuals yields insights into biology and relationships with other traits. (2020)
- Polygenic prediction via Bayesian regression and continuous shrinkage priors. (2019)
- Sex differences in the genetic architecture of obsessive-compulsive disorder. (2019)
- Discovery of the first genome-wide significant risk loci for attention deficit/hyperactivity disorder. (2019)
- Genomic structural equation modelling provides insights into the multivariate genetic architecture of complex traits. (2019)
- Identification of common genetic risk variants for autism spectrum disorder. (2019)
- Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence. (2018)
- Eigenanalysis of SNP data with an identity by descent interpretation. (2016)
- KAT2B polymorphism identified for drug abuse in African Americans with regulatory links to drug abuse pathways in human prefrontal cortex. (2016)
- Association of germline variants in the APOBEC3 region with cancer risk and enrichment with APOBEC-signature mutations in tumors. (2016)
- High-Accuracy HLA Type Inference from Whole-Genome Sequencing Data Using Population Reference Graphs. (2016)
- Genome-wide association study identifies 74 loci associated with educational attainment. (2016)
- DNA methylation signature of human fetal alcohol spectrum disorder. (2016)
- An introductory review of parallel independent component analysis (p-ICA) and a guide to applying p-ICA to genetic data and imaging phenotypes to identify disease-associated biological pathways and systems in common complex disorders. (2015)
- Genome-Wide Meta-Analysis of Longitudinal Alcohol Consumption Across Youth and Early Adulthood. (2015)
- HLAreporter: a tool for HLA typing from next generation sequencing data. (2015)
- Reconstructing A/B compartments as revealed by Hi-C using long-range correlations in epigenetic data. (2015)
- Hidden Markov Model-Based CNV Detection Algorithms for Illumina Genotyping Microarrays. (2014)
- The ENIGMA Consortium: large-scale collaborative analyses of neuroimaging and genetic data. (2014)
- Heritability and genomics of gene expression in peripheral blood. (2014)
- A mega-analysis of genome-wide association studies for major depressive disorder. (2013)
- Large-scale genotyping identifies 41 new loci associated with breast cancer risk. (2013)
- HLA typing from 1000 genomes whole genome and whole exome illumina data. (2013)
- A cross-platform analysis of 14,177 expression quantitative trait loci derived from lymphoblastoid cell lines. (2013)
- Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women. (2012)
- Meta-analysis and genome-wide interpretation of genetic susceptibility to drug addiction. (2011)
- A framework for variation discovery and genotyping using next-generation DNA sequencing data. (2011)
- Gene set analysis of genome-wide association studies: methodological issues and perspectives. (2011)
- Haplotype block structure of the genomic region of the mu opioid receptor gene. (2011)
- Expanding the range of ZNF804A variants conferring risk of psychosis. (2011)
- Genome-wide association study identifies five new schizophrenia loci. (2011)
- Integrative analysis of the melanoma transcriptome. (2010)
- The psychiatric GWAS consortium: big science comes to psychiatry. (2010)
- Multiple cholinergic nicotinic receptor genes affect nicotine dependence risk in African and European Americans. (2010)
- Genetics and beyond--the transcriptome of human monocytes and disease susceptibility. (2010)
- The psychiatric GWAS consortium: big science comes to psychiatry. (2010)
- Tackling the widespread and critical impact of batch effects in high-throughput data. (2010)
- The CHRNA5-CHRNA3-CHRNB4 nicotinic receptor subunit gene cluster affects risk for nicotine dependence in African-Americans and in European-Americans. (2009)
- Genomewide association studies: history, rationale, and prospects for psychiatric disorders. (2009)
- Genomewide association studies and human disease. (2009)
- Genome-wide and candidate gene association study of cigarette smoking behaviors. (2009)
- PennCNV: an integrated hidden Markov model designed for high-resolution copy number variation detection in whole-genome SNP genotyping data. (2007)
- Accurate and reliable high-throughput detection of copy number variation in the human genome. (2006)
Merged raw entities (12)
All extracted name/type variants the normalize job merged into this entity. Use this to spot wrong merges, or aliases that should be split off.
| Raw name | Type | Papers | Mentions |
|---|---|---|---|
| hapmap3 | cohort | 17 | 30 |
| hapmap samples | cohort | 12 | 14 |
| hapmap3 snps | variant | 8 | 11 |
| hapmap populations | cohort | 7 | 7 |
| hapmap yri | cohort | 5 | 6 |
| hapmap snps | variant | 4 | 5 |
| hapmap3 | drug | 2 | 2 |
| hapmap3 ceu | cohort | 2 | 2 |
| hapmap database | cohort | 2 | 2 |
| hapmap phase 3 | cohort | 1 | 7 |
| ceu founder population | cohort | — | — |
| hapmap snp | cohort | — | — |