RNA drug
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Mentioned in (235)
Papers in which this entity is mentioned.
- Genome modelling and design across all domains of life with Evo 2. (2026)
- A guide to transcriptomic deconvolution in cancer. (2026)
- Artificial Intelligence agents for biological research: a survey. (2026)
- Integrated in vivo combinatorial functional genomics and spatial transcriptomics of tumours to decode genotype-to-phenotype relationships. (2026)
- Single-cell exon deletion profiling reveals splicing events that shape gene expression and cell state dynamics. (2026)
- Whole-genome landscapes of 1,364 breast cancers. (2026)
- Lineage labeling with zebrafish hand2 Cre and CreERT2 recombinase CRISPR knock-ins. (2026)
- LINE-1 retrotransposons mediate cis-acting transcriptional control in human pluripotent stem cells and regulate early brain development. (2025)
- Enhancer activation from transposable elements in extrachromosomal DNA. (2025)
- Stratified Medicine Pediatrics: Cell-Free DNA and Serial Tumor Sequencing Identifies Subtype-Specific Cancer Evolution and Epigenetic States. (2025)
- Connectome-seq: High-throughput Mapping of Neuronal Connectivity at Single-Synapse Resolution via Barcode Sequencing. (2025)
- Tumour-wide RNA splicing aberrations generate actionable public neoantigens. (2025)
- Multi-omic quantitative trait loci link tandem repeat size variation to gene regulation in human brain. (2025)
- Rapid brain tumor classification from sparse epigenomic data. (2025)
- Efficient and accurate search in petabase-scale sequence repositories. (2025)
- Massively parallel reporter assay investigates shared genetic variants of eight psychiatric disorders. (2025)
- Functional analysis of cancer-associated germline risk variants. (2025)
- Flexynesis: A deep learning toolkit for bulk multi-omics data integration for precision oncology and beyond. (2025)
- Integrated single-cell multiomic profiling of caudate nucleus suggests key mechanisms in alcohol use disorder. (2025)
- Single cell and spatial alternative splicing analysis with Nanopore long read sequencing. (2025)
- Alcohol Exposure May Increase Prenatal Choline Needs Through Redirection of Choline into Lipid Synthesis Rather than Methyl Donation. (2025)
- MYC ecDNA promotes intratumour heterogeneity and plasticity in PDAC. (2025)
- Foundation models in bioinformatics. (2025)
- Transcription start sites experience a high influx of heritable variants fueled by early development. (2025)
- Global impact of unproductive splicing on human gene expression. (2024)
- Sequence modeling and design from molecular to genome scale with Evo. (2024)
- Integrated Single-Cell Multiomic Profiling of Caudate Nucleus Suggests Key Mechanisms in Alcohol Use Disorder. (2024)
- Alternative splicing of transcript mediates the response of circadian clocks to temperature changes. (2024)
- Insights for precision oncology from the integration of genomic and clinical data of 13,880 tumors from the 100,000 Genomes Cancer Programme. (2024)
- The Application of Long-Read Sequencing to Cancer. (2024)
- A survey of mapping algorithms in the long-reads era. (2023)
- Towards understandings of serine/arginine-rich splicing factors. (2023)
- GenSLMs: Genome-scale language models reveal SARS-CoV-2 evolutionary dynamics. (2022)
- Nanopore sequencing of RNA and cDNA molecules in . (2022)
- Human Retrotransposons and Effective Computational Detection Methods for Next-Generation Sequencing Data. (2022)
- Massively parallel reporter perturbation assays uncover temporal regulatory architecture during neural differentiation. (2022)
- Estimation of tumor cell total mRNA expression in 15 cancer types predicts disease progression. (2022)
- Inferring gene expression from cell-free DNA fragmentation profiles. (2022)
- Feasibility of whole genome and transcriptome profiling in pediatric and young adult cancers. (2022)
- FXR1 regulation of parvalbumin interneurons in the prefrontal cortex is critical for schizophrenia-like behaviors. (2021)
- Integrated analysis of multimodal single-cell data. (2021)
- Most non-canonical proteins uniquely populate the proteome or immunopeptidome. (2021)
- Nanopore sequencing technology, bioinformatics and applications. (2021)
- Integrated Genomic Analysis Identifies Driver Genes and Cisplatin-Resistant Progenitor Phenotype in Pediatric Liver Cancer. (2021)
- Application of third-generation sequencing in cancer research. (2021)
- Alternative splicing: Human disease and quantitative analysis from high-throughput sequencing. (2021)
- Joint single-cell measurements of nuclear proteins and RNA in vivo. (2021)
- Early-life nicotine or cotinine exposure produces long-lasting sleep alterations and downregulation of hippocampal corticosteroid receptors in adult mice. (2021)
- Infant circulating MicroRNAs as biomarkers of effect in fetal alcohol spectrum disorders. (2021)
- Ethanol modulation of hippocampal neuroinflammation, myelination, and neurodevelopment in a postnatal mouse model of fetal alcohol spectrum disorders. (2021)
- Exposure to ethanol leads to midfacial hypoplasia in a zebrafish model of FASD via indirect interactions with the Shh pathway. (2021)
- Simultaneous single cell measurements of intranuclear proteins and gene expression (2021)
- NUP98-NSD1 Driven MDS/MPN in Childhood Masquerading as JMML. (2021)
- Simultaneous epigenetic perturbation and genome imaging reveal distinct roles of H3K9me3 in chromatin architecture and transcription. (2020)
- Fetal alcohol spectrum disorder predisposes to metabolic abnormalities in adulthood. (2020)
- Discovery of regulatory noncoding variants in individual cancer genomes by using cis-X. (2020)
- B cells and tertiary lymphoid structures promote immunotherapy response. (2020)
- Neonatal Alcohol Exposure in Mice Induces Select Differentiation- and Apoptosis-Related Chromatin Changes Both Independent of and Dependent on Sex. (2020)
- Tead transcription factors differentially regulate cortical development. (2020)
- Emerging Roles of SRSF3 as a Therapeutic Target for Cancer. (2020)
- Chronic alcohol-induced neuroinflammation involves CCR2/5-dependent peripheral macrophage infiltration and microglia alterations. (2020)
- Gestational diabetes induces behavioral and brain gene transcription dysregulation in adult offspring. (2020)
- Effects of chronic intermittent ethanol exposure and withdrawal on neuroblastoma cell transcriptome. (2020)
- Comprehensive analysis of structural variants in breast cancer genomes using single-molecule sequencing. (2020)
- Hypermethylation of Proopiomelanocortin and Period 2 Genes in Blood Are Associated with Greater Subjective and Behavioral Motivation for Alcohol in Humans. (2019)
- Genetic compensation triggered by mutant mRNA degradation. (2019)
- CommonMind Consortium provides transcriptomic and epigenomic data for Schizophrenia and Bipolar Disorder. (2019)
- Whole-genome sequencing of triple-negative breast cancers in a population-based clinical study. (2019)
- Fast and robust deconvolution of tumor infiltrating lymphocyte from expression profiles using least trimmed squares. (2019)
- RNA-Seq Signatures Normalized by mRNA Abundance Allow Absolute Deconvolution of Human Immune Cell Types. (2019)
- Genome-Informed Targeted Therapy for Osteosarcoma. (2019)
- The role and robustness of the Gini coefficient as an unbiased tool for the selection of Gini genes for normalising expression profiling data. (2019)
- RNA sequence analysis reveals macroscopic somatic clonal expansion across normal tissues. (2019)
- Persistent Changes in Stress-Regulatory Genes in Pregnant Women or Children Exposed Prenatally to Alcohol. (2019)
- Best practices for bioinformatic characterization of neoantigens for clinical utility. (2019)
- Circular DNA elements of chromosomal origin are common in healthy human somatic tissue. (2018)
- SSMART: sequence-structure motif identification for RNA-binding proteins. (2018)
- A SNP panel for identification of DNA and RNA specimens. (2018)
- The Cancer Spliceome: Reprograming of Alternative Splicing in Cancer. (2018)
- Sequence, Structure, and Context Preferences of Human RNA Binding Proteins. (2018)
- Integrative transcriptome analyses of the aging brain implicate altered splicing in Alzheimer's disease susceptibility. (2018)
- Pan-cancer genome and transcriptome analyses of 1,699 paediatric leukaemias and solid tumours. (2018)
- A compendium of conserved cleavage and polyadenylation events in mammalian genes. (2018)
- Lower mRNA Expression in First-Trimester Decidual Tissue from Uncomplicated Term Pregnancies with a Male Fetus. (2018)
- Positively selected enhancer elements endow osteosarcoma cells with metastatic competence. (2018)
- Clinical cancer genomic profiling by three-platform sequencing of whole genome, whole exome and transcriptome. (2018)
- Failed Progenitor Specification Underlies the Cardiopharyngeal Phenotypes in a Zebrafish Model of 22q11.2 Deletion Syndrome. (2018)
- Constrained release of lamina-associated enhancers and genes from the nuclear envelope during T-cell activation facilitates their association in chromosome compartments. (2017)
- Integrated Molecular Meta-Analysis of 1,000 Pediatric High-Grade and Diffuse Intrinsic Pontine Glioma. (2017)
- Statistical algorithms improve accuracy of gene fusion detection. (2017)
- Genetic effects on gene expression across human tissues. (2017)
- ChimeRScope: a novel alignment-free algorithm for fusion transcript prediction using paired-end RNA-Seq data. (2017)
- Patient-derived xenografts undergo mouse-specific tumor evolution. (2017)
- Orthotopic patient-derived xenografts of paediatric solid tumours. (2017)
- Mutational landscape of metastatic cancer revealed from prospective clinical sequencing of 10,000 patients. (2017)
- Alternative Polyadenylation Directs Tissue-Specific miRNA Targeting in Somatic Tissues. (2017)
- Cancer-Specific Retargeting of BAF Complexes by a Prion-like Domain. (2017)
- A method to reduce ancestry related germline false positives in tumor only somatic variant calling. (2017)
- Disconnect between alcohol-induced alterations in chromatin structure and gene transcription in a mouse embryonic stem cell model of exposure. (2017)
- Imaging Genetics and Genomics in Psychiatry: A Critical Review of Progress and Potential. (2017)
- Interaction of glycosphingolipids GD3 and GD2 with growth factor receptors maintains breast cancer stem cell phenotype. (2017)
- PGBD5 promotes site-specific oncogenic mutations in human tumors. (2017)
- The Ontology for Biomedical Investigations. (2016)
- Liver PPARα is crucial for whole-body fatty acid homeostasis and is protective against NAFLD. (2016)
- Somatic cancer variant curation and harmonization through consensus minimum variant level data. (2016)
- Medulloblastoma-associated DDX3 variant selectively alters the translational response to stress. (2016)
- Global analysis of somatic structural genomic alterations and their impact on gene expression in diverse human cancers. (2016)
- Landscape of somatic mutations in 560 breast cancer whole-genome sequences. (2016)
- Alteration of Gene Expression, DNA Methylation, and Histone Methylation in Free Radical Scavenging Networks in Adult Mouse Hippocampus following Fetal Alcohol Exposure. (2016)
- Divergent clonal evolution of castration-resistant neuroendocrine prostate cancer. (2016)
- Experience-Dependent Accumulation of N6-Methyladenosine in the Prefrontal Cortex Is Associated with Memory Processes in Mice. (2016)
- CEL-Seq2: sensitive highly-multiplexed single-cell RNA-Seq. (2016)
- Rapid Ngn2-induction of excitatory neurons from hiPSC-derived neural progenitor cells. (2016)
- Roar: detecting alternative polyadenylation with standard mRNA sequencing libraries. (2016)
- Three decades of nanopore sequencing. (2016)
- Evolutionary Insights into RNA trans-Splicing in Vertebrates. (2016)
- Development and clinical application of an integrative genomic approach to personalized cancer therapy. (2016)
- Estimating the population abundance of tissue-infiltrating immune and stromal cell populations using gene expression. (2016)
- Establishment of human iPSC-based models for the study and targeting of glioma initiating cells. (2016)
- Tools and best practices for data processing in allelic expression analysis. (2015)
- EWS and FUS bind a subset of transcribed genes encoding proteins enriched in RNA regulatory functions. (2015)
- limma powers differential expression analyses for RNA-sequencing and microarray studies. (2015)
- GABRA2 Alcohol Dependence Risk Allele is Associated with Reduced Expression of Chromosome 4p12 GABAA Subunit Genes in Human Neural Cultures. (2015)
- Design and bioinformatics analysis of genome-wide CLIP experiments. (2015)
- Long Noncoding RNA-Directed Epigenetic Regulation of Gene Expression Is Associated With Anxiety-like Behavior in Mice. (2015)
- Epigenomics and the structure of the living genome. (2015)
- Early-life exposure to the SSRI paroxetine exacerbates depression-like behavior in anxiety/depression-prone rats. (2015)
- Droplet barcoding for single-cell transcriptomics applied to embryonic stem cells. (2015)
- Position-specific binding of FUS to nascent RNA regulates mRNA length. (2015)
- Orchestrating high-throughput genomic analysis with Bioconductor. (2015)
- Systematic pan-cancer analysis of tumour purity. (2015)
- Prenatal ethanol exposure alters adult hippocampal VGLUT2 expression with concomitant changes in promoter DNA methylation, H3K4 trimethylation and miR-467b-5p levels. (2015)
- RNA imaging. Spatially resolved, highly multiplexed RNA profiling in single cells. (2015)
- Assessing Computational Steps for CLIP-Seq Data Analysis. (2015)
- Reverse genetic screening reveals poor correlation between morpholino-induced and mutant phenotypes in zebrafish. (2015)
- The use of exome capture RNA-seq for highly degraded RNA with application to clinical cancer sequencing. (2015)
- Comprehensive genomic profiles of small cell lung cancer. (2015)
- Oncogenic fusion protein EWS-FLI1 is a network hub that regulates alternative splicing. (2015)
- MBASED: allele-specific expression detection in cancer tissues and cell lines. (2014)
- GABA-A and NMDA receptor subunit mRNA expression is altered in the caudate but not the putamen of the postmortem brains of alcoholics. (2014)
- An atlas of active enhancers across human cell types and tissues. (2014)
- RADIA: RNA and DNA integrated analysis for somatic mutation detection. (2014)
- A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium. (2014)
- RNA-binding protein RBM20 represses splicing to orchestrate cardiac pre-mRNA processing. (2014)
- Maternal and neonatal plasma microRNA biomarkers for fetal alcohol exposure in an ovine model. (2014)
- Simultaneous high-resolution detection of multiple transcripts combined with localization of proteins in whole-mount embryos. (2014)
- Gene expression signatures affected by alcohol-induced DNA methylomic deregulation in human embryonic stem cells. (2014)
- High-throughput transcriptome sequencing identifies candidate genetic modifiers of vulnerability to fetal alcohol spectrum disorders. (2014)
- Inference of high resolution HLA types using genome-wide RNA or DNA sequencing reads. (2014)
- Effects of Acute Prenatal Exposure to Ethanol on microRNA Expression are Ameliorated by Social Enrichment. (2014)
- Inhibition of histone H3K9 acetylation by anacardic acid can correct the over-expression of Gata4 in the hearts of fetal mice exposed to alcohol during pregnancy. (2014)
- Genetic variability in the regulation of gene expression in ten regions of the human brain. (2014)
- Comprehensive analysis of the transcriptional landscape of the human FMR1 gene reveals two new long noncoding RNAs differentially expressed in Fragile X syndrome and Fragile X-associated tremor/ataxia syndrome. (2014)
- Choline partially prevents the impact of ethanol on the lipid raft dependent functions of l1 cell adhesion molecule. (2014)
- RNA in unexpected places: long non-coding RNA functions in diverse cellular contexts. (2013)
- Identification of cell-specific patterns of reference gene stability in quantitative reverse-transcriptase polymerase chain reaction studies of embryonic, placental and neural stem models of prenatal ethanol exposure. (2013)
- Ewing sarcoma protein: a key player in human cancer. (2013)
- Plasma cytokine profiling in sibling pairs discordant for autism spectrum disorder. (2013)
- Intragenic DNA methylation modulates alternative splicing by recruiting MeCP2 to promote exon recognition. (2013)
- ACMG clinical laboratory standards for next-generation sequencing. (2013)
- Identification and characterization of the miRNA transcriptome of Ovis aries. (2013)
- Gene expression in the human brain: the current state of the study of specificity and spatiotemporal dynamics. (2013)
- The Growing Importance of CNVs: New Insights for Detection and Clinical Interpretation. (2013)
- Whole-genome sequencing identifies genetic alterations in pediatric low-grade gliomas. (2013)
- Dysregulation of the long non-coding RNA transcriptome in a Rett syndrome mouse model. (2013)
- The Genotype-Tissue Expression (GTEx) project. (2013)
- The Genotype-Tissue Expression (GTEx) project. (2013)
- STAR: ultrafast universal RNA-seq aligner. (2013)
- Alcohol exposure during development: Impact on the epigenome. (2013)
- LIN28B promotes growth and tumorigenesis of the intestinal epithelium via Let-7. (2013)
- Cannabinoid receptor 1 signaling in embryo neurodevelopment. (2012)
- Recurrent variations in DNA methylation in human pluripotent stem cells and their differentiated derivatives. (2012)
- Opposing actions of ethanol and nicotine on microRNAs are mediated by nicotinic acetylcholine receptors in fetal cerebral cortical-derived neural progenitor cells. (2012)
- An Inv(16)(p13.3q24.3)-encoded CBFA2T3-GLIS2 fusion protein defines an aggressive subtype of pediatric acute megakaryoblastic leukemia. (2012)
- An anatomically comprehensive atlas of the adult human brain transcriptome. (2012)
- Early second trimester maternal plasma choline and betaine are related to measures of early cognitive development in term infants. (2012)
- The majority of microRNAs detectable in serum and saliva is concentrated in exosomes. (2012)
- Pilot study of iPS-derived neural cells to examine biologic effects of alcohol on human neurons in vitro. (2012)
- The future of DNA sequence archiving. (2012)
- Circular RNAs are the predominant transcript isoform from hundreds of human genes in diverse cell types. (2012)
- FGF21 promotes metabolic homeostasis via white adipose and leptin in mice. (2012)
- Annotation of functional variation in personal genomes using RegulomeDB. (2012)
- Emerging role of non-coding RNA in neural plasticity, cognitive function, and neuropsychiatric disorders. (2012)
- An integrated encyclopedia of DNA elements in the human genome. (2012)
- Summarizing and correcting the GC content bias in high-throughput sequencing. (2012)
- HLA typing from RNA-Seq sequence reads. (2012)
- Differential expression in RNA-seq: a matter of depth. (2011)
- Long pre-mRNA depletion and RNA missplicing contribute to neuronal vulnerability from loss of TDP-43. (2011)
- Spatio-temporal transcriptome of the human brain. (2011)
- Regulation of chromatin by histone modifications. (2011)
- Quality control parameters on a large dataset of regionally dissected human control brains for whole genome expression studies. (2011)
- MicroRNA expression in abdominal and gluteal adipose tissue is associated with mRNA expression levels and partly genetically driven. (2011)
- Postmortem interval effect on RNA and gene expression in human brain tissue. (2011)
- Effects of ethanol and NAP on cerebellar expression of the neural cell adhesion molecule L1. (2011)
- ViennaRNA Package 2.0. (2011)
- CTCF-promoted RNA polymerase II pausing links DNA methylation to splicing. (2011)
- Molecular mechanisms of long noncoding RNAs. (2011)
- Trans-eQTLs reveal that independent genetic variants associated with a complex phenotype converge on intermediate genes, with a major role for the HLA. (2011)
- Haemolysis during sample preparation alters microRNA content of plasma. (2011)
- Alteration of gene expression by alcohol exposure at early neurulation. (2011)
- Genetics of psychiatric disorders methods: molecular approaches. (2010)
- Integrative analysis of the melanoma transcriptome. (2010)
- DNA copy number, including telomeres and mitochondria, assayed using next-generation sequencing. (2010)
- Long noncoding RNAs with enhancer-like function in human cells. (2010)
- Fine mapping of calcineurin (PPP3CA) gene reveals novel alternative splicing patterns, association of 5'UTR trinucleotide repeat with addiction vulnerability, and differential isoform expression in Alzheimer's disease. (2010)
- Changes in gene expression in regions of the extended amygdala of alcohol-preferring rats after binge-like alcohol drinking. (2010)
- The role of NOX enzymes in ethanol-induced oxidative stress and apoptosis in mouse embryos. (2010)
- Genetics and beyond--the transcriptome of human monocytes and disease susceptibility. (2010)
- The majority of total nuclear-encoded non-ribosomal RNA in a human cell is 'dark matter' un-annotated RNA. (2010)
- Rapid, low-input, low-bias construction of shotgun fragment libraries by high-density in vitro transposition. (2010)
- The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants. (2010)
- Effects of moderate drinking during pregnancy on placental gene expression. (2010)
- Conserved role of intragenic DNA methylation in regulating alternative promoters. (2010)
- MIQE précis: Practical implementation of minimum standard guidelines for fluorescence-based quantitative real-time PCR experiments. (2010)
- Splicing factor SFRS1 recognizes a functionally diverse landscape of RNA transcripts. (2009)
- An exploration of attitudes among black Americans towards psychiatric genetic research. (2009)
- The future of genetics in psychology and psychiatry: microarrays, genome-wide association, and non-coding RNA. (2009)
- Prenatal NAP+SAL prevents developmental delay in a mouse model of Down syndrome through effects on N-methyl-D-aspartic acid and gamma-aminobutyric acid receptors. (2009)
- Computation for ChIP-seq and RNA-seq studies. (2009)
- The relationship of 5HTT (SLC6A4) methylation and genotype on mRNA expression and liability to major depression and alcohol dependence in subjects from the Iowa Adoption Studies. (2008)
- Circulating microRNAs as stable blood-based markers for cancer detection. (2008)
- Alcohol self-administration acutely stimulates the hypothalamic-pituitary-adrenal axis, but alcohol dependence leads to a dampened neuroendocrine state. (2008)
- 3' end mRNA processing: molecular mechanisms and implications for health and disease. (2008)
- Identification of novel bone-specific molecular targets of binge alcohol and ibandronate by transcriptome analysis. (2008)
- RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays. (2008)
- Molecular specification and patterning of progenitor cells in the lateral and medial ganglionic eminences. (2008)
- HITS-CLIP yields genome-wide insights into brain alternative RNA processing. (2008)
- Neuroadaptations in human chronic alcoholics: dysregulation of the NF-kappaB system. (2007)
- Genome-wide maps of chromatin state in pluripotent and lineage-committed cells. (2007)
- Perlecan, a candidate gene for the CAPB locus, regulates prostate cancer cell growth via the Sonic Hedgehog pathway. (2006)
- Taverna: a tool for building and running workflows of services. (2006)
- Comprehensive algorithm for quantitative real-time polymerase chain reaction. (2005)
- Mouse Af9 is a controller of embryo patterning, like Mll, whose human homologue fuses with Af9 after chromosomal translocation in leukemia. (2002)
- A new mathematical model for relative quantification in real-time RT-PCR. (2001)
- Tracking neuronal fiber pathways in the living human brain. (1999)
Merged raw entities (2)
All extracted name/type variants the normalize job merged into this entity. Use this to spot wrong merges, or aliases that should be split off.
| Raw name | Type | Papers | Mentions |
|---|---|---|---|
| rna | drug | 235 | 456 |
| ribonucleic acid | drug | — | — |