Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation.

paper Cited Public

Authors: O'Leary, Nuala A; Wright, Mathew W; Brister, J Rodney; Ciufo, Stacy; Haddad, Diana; McVeigh, Rich; Rajput, Bhanu; Robbertse, Barbara; Smith-White, Brian; Ako-Adjei, Danso; Astashyn, Alexander; Badretdin, Azat; Bao, Yiming; Blinkova, Olga; Brover, Vyacheslav; Chetvernin, Vyacheslav; Choi, Jinna; Cox, Eric; Ermolaeva, Olga; Farrell, Catherine M; Goldfarb, Tamara; Gupta, Tripti; Haft, Daniel; Hatcher, Eneida; Hlavina, Wratko; Joardar, Vinita S; Kodali, Vamsi K; Li, Wenjun; Maglott, Donna; Masterson, Patrick; McGarvey, Kelly M; Murphy, Michael R; O'Neill, Kathleen; Pujar, Shashikant; Rangwala, Sanjida H; Rausch, Daniel; Riddick, Lillian D; Schoch, Conrad; Shkeda, Andrei; Storz, Susan S; Sun, Hanzhen; Thibaud-Nissen, Francoise; Tolstoy, Igor; Tully, Raymond E; Vatsan, Anjana R; Wallin, Craig; Webb, David; Wu, Wendy; Landrum, Melissa J; Kimchi, Avi; Tatusova, Tatiana; DiCuccio, Michael; Kitts, Paul; Murphy, Terence D; Pruitt, Kim D
Year: 2016
Journal: Nucleic acids research
PMID: 26553804
DOI: 10.1093/nar/gkv1189
PMCID: PMC4702849

#	Section	Preview
0	INTRODUCTION	For the past 15 years the National Center for Biotechnology Information (NCBI) RefSeq database has…
1	INTRODUCTION	(QA) checks with some specialized QA tests developed for different taxa or data types. For example,…
2	INTRODUCTION	In recent years advanced sequencing techniques have facilitated a substantial increase in whole…
3	INTRODUCTION	A unique aspect of the RefSeq dataset is the combined approach of leveraging computation,…
4	INTRODUCTION	targeted projects including curating genes and sequences for Homo sapiens, Mus musculus and other…
5	INTRODUCTION	In this paper, we report on our progress in expanding the RefSeq dataset to include more diverse…
6	GENERATING THE REFSEQ DATASET	RefSeq sequence records are generated by different methods depending on the sequence class and…
7	GENERATING THE REFSEQ DATASET	for exon pairs. The eukaryotic genomes which have been annotated by this pipeline are reported…
8	GENERATING THE REFSEQ DATASET	NCBI staff provide the bulk of RefSeq organelle genome annotation through propagation from the INSDC…
9	GENERATING THE REFSEQ DATASET	NCBI's prokaryotic (see below) and eukaryotic annotation pipelines have kept pace with the…
10	ACCESSING THE REFSEQ DATASET	The RefSeq homepage http://www.ncbi.nlm.nih.gov/refseq/ is a central hub for all aspects of the…
11	ACCESSING THE REFSEQ DATASET	RefSeq sequence data can be accessed interactively using NCBIs Nucleotide and Protein databases, in…
12	ACCESSING THE REFSEQ DATASET	RefSeq data are distributed via FTP through two sites, refseq (ftp://ftp.ncbi.nlm.nih.gov/refseq/)…
13	ACCESSING THE REFSEQ DATASET	RefSeq data can also be downloaded from the genomes FTP site. In August 2014 NCBI announced a major…
14	GROWTH AND STATISTICS	RefSeq FTP release 71 (July 2015) includes more than 77 million sequence records for more than 55…
15	GROWTH AND STATISTICS	The dramatic decrease in the number of plasmid protein records, and thus in the number of total…
16	VERTEBRATES	A select group of vertebrates including Homo sapiens, Mus musculus, Rattus norvegicus, Gallus…
17	VERTEBRATES	the gene, and/or relevant publications. Manual curation and literature review by the RefSeq group…
18	VERTEBRATES	a leucine. Thus, the curation process serves a dual purpose of providing accurate reference…
19	VERTEBRATES — RefSeqGene project	The RefSeqGene sub-project defines human genomic sequences to be used as reference standards for…

Citation	PMID	DOI	Status
Adams, M.J. et al., Arch. Virol., 2015, Ratification vote on taxonomic proposals to the International Committee on Taxonomy of Viruses (2015)	25913692	10.1007/s00705-015-2425-z	Cited
Ako-Adjei, D. et al., Nucleic Acids Res., 2015, HIV-1, human interaction database: current status and new features	25378338	10.1093/nar/gku1126	Cited
Bao, Y. et al., Arch. Virol., 2014, Improvements to pairwise sequence comparison (PASC): a genome-based web tool for virus classification	25119676	10.1007/s00705-014-2197-x	Cited
Bao, Y. et al., Viruses, 2012, PAirwise Sequence Comparison (PASC) and its application in the classification of filoviruses	23012628	10.3390/v4081318	Cited
Barbosa, C. et al., PLoS Genet., 2013, Gene expression regulation by upstream open reading frames and human disease	23950723	10.1371/journal.pgen.1003529	Cited
Bernstein, B.E. et al., Nat. Biotechnol., 2010, The NIH roadmap epigenomics mapping consortium	20944595	10.1038/nbt1010-1045	Cited
Besemer, J. et al., Nucleic Acids Res., 2001, GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions	11410670	10.1093/nar/29.12.2607	Cited
Bolouri, H., Trends Genet.: TIG, 2014, Modeling genomic regulatory networks with big data	24630831	10.1016/j.tig.2014.02.005	Cited
Borodovsky, M. et al., Curr. Protoc. Microbiol., 2014, Gene identification in prokaryotic genomes, phages, metagenomes, and EST sequences with GeneMarkS suite	24510847	10.1002/9780471729259.mc01e07s32	Cited
Brister, J.R. et al., Nucleic Acids Res., 2014, Virus Variation Resource–recent updates and future directions	24304891	10.1093/nar/gkt1268	Cited
Brister, J.R. et al., Nucleic Acids Res., 2015, NCBI viral genomes resource	25428358	10.1093/nar/gku1207	Cited
Brister, J.R. et al., Virology, 2012, Microbial virus genome annotation-mustering the troops to fight the sequence onslaught	23084289	10.1016/j.virol.2012.09.027	Cited
Brister, J.R. et al., Viruses, 2010, Towards viral genome annotation standards, report from the 2010 NCBI Annotation Workshop	21994619	10.3390/v2102258	Cited
Corte, L. et al., Food Microbiol., 2015, Phenotypic and molecular diversity of Meyerozyma guilliermondii strains isolated from food and other environmental niches, hints for an incipient speciation	25791010	10.1016/j.fm.2014.12.014	Cited
Dalgleish, R. et al., Genome Med., 2010, Locus Reference Genomic sequences: an improved basis for describing human DNA variants	20398331	10.1186/gm145	Cited
Derti, A. et al., Genome Res., 2012, A quantitative atlas of polyadenylation in five mammals	22454233	10.1101/gr.132563.111	Cited
Evin, G. et al., Drugs Aging, 2013, BACE1 as a therapeutic target in Alzheimer's disease: rationale and current status	23842796	10.1007/s40266-013-0099-3	Cited
Fagerberg, L. et al., Mol. Cell. Proteomics : MCP, 2014, Analysis of the human tissue-specific expression by genome-wide integration of transcriptomics and antibody-based proteomics	24309898	10.1074/mcp.M113.035600	Cited
Farrell, C.M. et al., Nucleic Acids Res., 2014, Current status and new features of the Consensus Coding Sequence database	24217909	10.1093/nar/gkt1059	Cited
Federhen, S., Nucleic Acids Res., 2015, Type material in the NCBI Taxonomy Database	25398905	10.1093/nar/gku1127	Cited
Gray, K.A. et al., Nucleic Acids Res., 2015, Genenames.org: the HGNC resources in 2015	25361968	10.1093/nar/gku1071	Cited
Hoffman, M.M. et al., Nucleic Acids Res., 2013, Integrative annotation of chromatin elements from ENCODE data	23221638	10.1093/nar/gks1284	Cited
Holt, R.A. et al., Science, 2002, The genome sequence of the malaria mosquito Anopheles gambiae	12364791	10.1126/science.1076181	Cited
Hopkins, B.D. et al., Science, 2013, A secreted PTEN phosphatase that enters cells to alter signaling and survival	23744781	10.1126/science.1234907	Cited
Irinyi, L. et al., Med. Mycol., 2015, International Society of Human and Animal Mycology (ISHAM)-ITS reference DNA barcoding database–the quality controlled standard tool for routine identification of human and animal pathogenic fungi	25802363	10.1093/mmy/myv008	Cited
J. Heredity, 2013, The i5K Initiative: advancing arthropod genomics for knowledge, human health, agriculture, and the environment	23940263	10.1093/jhered/est050	Cited
Jarvis, E.D. et al., Science, 2014, Whole-genome analyses resolve early branches in the tree of life of modern birds	25504713	10.1126/science.1253451	Cited
Kari, V. et al., PLoS One, 2013, A subset of histone H2B genes produces polyadenylated mRNAs under a variety of cellular conditions	23717473	10.1371/journal.pone.0063745	Cited
Knight, M. et al., Front. Genet., 2014, Schistosomes and snails: a molecular encounter	25101114	10.3389/fgene.2014.00230	Cited
Kodzius, R. et al., Nat. Methods, 2006, CAGE: cap analysis of gene expression	16489339	10.1038/nmeth0306-211	Cited
Kozomara, A. et al., Nucleic Acids Res., 2014, miRBase: annotating high confidence microRNAs using deep sequencing data	24275495	10.1093/nar/gkt1181	Cited
Kuhn, J.H. et al., Arch. Virol., 2015, Taxonomic reorganization of the family Bornaviridae	25449305	10.1007/s00705-014-2276-z	Cited
Kuhn, J.H. et al., Viruses, 2014, Filovirus RefSeq entries: evaluation and selection of filovirus type variants, type sequences, and names	25256396	10.3390/v6093663	Cited
Lander, E.S. et al., Nature, 2001, Initial sequencing and analysis of the human genome	11237011	10.1038/35057062	Cited
Liang, H. et al., Cell Metab., 2014, PTENalpha, a PTEN isoform translated through alternative initiation, regulates mitochondrial function and energy metabolism	24768297	10.1016/j.cmet.2014.03.023	Cited
Lin, M.F. et al., Bioinformatics, 2011, PhyloCSF: a comparative genomics method to distinguish protein coding and non-coding regions	21685081	10.1093/bioinformatics/btr209	Cited
Marzluff, W.F. et al., Genomics, 2002, The human and mouse replication-dependent histone genes	12408966	—	Cited
Matthijnssens, J. et al., Arch. Virol., 2011, Uniformity of rotavirus strain nomenclature proposed by the Rotavirus Classification Working Group (RCWG)	21597953	10.1007/s00705-011-1006-z	Cited
McGarvey, K.M. et al., Mamm. Genome, 2015, Mouse genome annotation by the RefSeq project	26215545	10.1007/s00335-015-9585-8	Cited
Mi, S. et al., Nature, 2000, Syncytin is a captive retroviral envelope protein involved in human placental morphogenesis	10693809	10.1038/35001608	Cited
Mittelbach, M. et al., BMC Ecol., 2015, Nectar sugars and bird visitation define a floral niche for basidiomycetous yeast on the Canary Islands	25638173	10.1186/s12898-015-0036-x	Cited
Morris, K.V. et al., Nat. Rev. Genet., 2014, The rise of regulatory RNA	24776770	10.1038/nrg3722	Cited
Nature, 2006, Insights into social insects from the genome of the honeybee Apis mellifera	17073008	10.1038/nature05260	Cited
Nawrocki, E.P. et al., Nucleic Acids Res., 2015, Rfam 12.0: updates to the RNA families database	25392425	10.1093/nar/gku1063	Cited
Nilsson, R.H. et al., Microb. Environ/JSME, 2015, A comprehensive, automatically updated fungal ITS sequence dataset for reference-based chimera control in environmental sequencing efforts	25786896	10.1264/jsme2.ME14121	Cited
Nosek, B.A. et al., Science, 2015, SCIENTIFIC STANDARDS. Promoting an open research culture	26113702	10.1126/science.aab2374	Cited
Price, A.L. et al., Bioinformatics, 2005, De novo identification of repeat families in large genomes	15961478	10.1093/bioinformatics/bti1018	Cited
Pruitt, K.D. et al., Nucleic Acids Res., 2007, NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins	17130148	10.1093/nar/gkl842	Cited
Radoshitzky, S.R. et al., Arch. Virol., 2015, Past, present, and future of arenavirus taxonomy	25935216	10.1007/s00705-015-2418-y	Cited
Rajput, B. et al., Nucleic Acids Res., 2015, RefSeq curation and annotation of antizyme and antizyme inhibitor genes in vertebrates	26170238	10.1093/nar/gkv713	Cited
Ruzicka, L. et al., Genesis, 2015, ZFIN, The zebrafish model organism database: Updates and new directions	26097180	10.1002/dvg.22868	Cited
Schoch, C.L. et al., Database, 2014, Finding needles in haystacks: linking scientific names, reference specimens and molecular data for Fungi	24980130	10.1093/database/bau061	Cited
Schoch, C.L. et al., Proc. Natl. Acad. Sci. U.S.A., 2012, Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi	22454494	10.1073/pnas.1117018109	Cited
Scientists, G.C.o. et al., J. Heredity, 2014, The Global Invertebrate Genomics Alliance (GIGA): developing community resources to study diverse invertebrate genomes	24336862	10.1093/jhered/est084	Cited
Seto, D. et al., J. Virol., 2011, Using the whole-genome sequence to characterize and name human adenoviruses	21450823	10.1128/JVI.00354-11	Cited
Tatusova, T. et al., Nucleic Acids Res., 2015, Update on RefSeq microbial genomes resources	25510495	10.1093/nar/gku1062	Cited
UniProt, C., Nucleic acids Res., 2015, UniProt: a hub for protein information	25348405	10.1093/nar/gku989	Cited
Visagie, C.M. et al., Stud. Mycol., 2014, Identification and nomenclature of the genus Penicillium	25505353	10.1016/j.simyco.2014.09.001	Cited
Xia, Q. et al., Science, 2004, A draft sequence for the genome of the domesticated silkworm (Bombyx mori)	15591204	10.1126/science.1102210	Cited
Yu, X. et al., Mol. Med. Rep., 2015, Long non-coding RNA HOTAIR:a novel oncogene (review)	26238267	10.3892/mmr.2015.4161	Cited
Zasloff, M., N. Engl. J. Med., 2002, Antimicrobial peptides in health and disease	12374882	10.1056/NEJMe020106	Cited
Zhang, G. et al., Nature, 2012, The oyster genome reveals stress adaptation and complexity of shell formation	22992520	10.1038/nature11413	Cited
Zhang, G. et al., Science, 2014, Comparative genomics reveals insights into avian genome evolution and adaptation	25504712	10.1126/science.1251385	Cited
Zhang, Z.Q., Zootaxa, 2013, Animal biodiversity: An outline of higher-level classification and survey of taxonomic richness (Addenda 2013)	26146682	10.11646/zootaxa.3703.1.1	Cited

In this knowledge base

Title	Year	PMID
Meta-analysis of up to 622,409 individuals identifies 40 novel smoking behaviour associated genetic loci.	2020	30617275
Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection.	2018	29483656

External

Title	Authors	Journal	Year	Link
A bioinformatic ecological risk assessment framework for externally applied double-stranded RNA-based biopesticides.	De Neef E et al.	—	2026	→
A chromosome-level reference genome assembly for Gilbert's skink Plestiodon gilberti.	Richmond JQ et al.	—	2026	→
A comprehensive survey of genome language models in bioinformatics.	Shu L et al.	—	2026	→
A genome assembly of Greene's tuctoria, Tuctoria greenei, an amphibious endemic and endangered California vernal pool grass.	Toews DJ et al.	—	2026	→
A haplotype-resolved genome assembly of hexaploid Kentucky-31 tall fescue (Lolium arundinaceum).	Bushman BS et al.	—	2026	→
AI-driven forecasting of Vibrio vulnificus in the Southern Baltic Sea using high-resolution data.	Glackin CC et al.	—	2026	→
A Multi-omics Approach for Microbiome Data Analysis in Legumes.	Sahil R et al.	—	2026	→
Analysis of mobile genetic elements carrying mcr genes in clinical Leclercia spp. isolates.	Chen D et al.	—	2026	→
An open-source clinical bioinformatics pipeline for real-world NGS implementation: translating genomic variants into actionable treatment strategies in oncology.	Privitera GF et al.	—	2026	→
A novel North Sea ammonia-oxidizing archaeon Nitrosarchaeum marinum leverages a high abundance of transport systems to grow over a wide salinity range.	Lüke C et al.	—	2026	→
AraNSdb: a dedicated database of stress-responsive non-coding RNAs in <i>Arabidopsis thaliana</i>.	Vivek AT et al.	—	2026	→
A rapid ionic liquid-based DNA extraction method for molecular diagnostics of urinary tract infections.	Kreuter J et al.	—	2026	→
A reference genome for Colusa grass, Neostapfia colusana, a threatened and endangered California vernal pool plant.	Pennington LK et al.	—	2026	→
Artificial intelligence in metagenome-assembled genome reconstruction: Tools, pipelines, and future directions.	Sagar K et al.	—	2026	→
Assessment of Fecal Microbiota in Healthy Dogs and Dogs with Cutaneous Mast Cell Tumors Treated with Electrochemotherapy Combined with Gene Electrotransfer of IL-12.	Lisjak A et al.	—	2026	→
A WGS workflow for identifying genetically modified and foodborne-pathogenic <i>Bacillus</i> isolates.	Godfroid M et al.	—	2026	→
Bacteria sense the antibiotic rifampicin through a widespread dual-promoter based alarm system.	Sudzinová P et al.	—	2026	→
Biallelic <italic>TMEM72</italic> Variants in Patients with a Nephronophthisis-Like Phenotype.	Claus LR et al.	—	2026	→
BINge: Multispecies Ortholog Clustering for Differential Gene Expression Analyses.	Stewart Z et al.	—	2026	→
Boundary-associated propagation of a processed pseudogene dissects pre-existing limitations of genome annotation in the T2T era.	Lee MG	—	2026	→
Brownotate, a Comprehensive Solution to Generate Protein Sequence Databases for Any Species.	Brown A et al.	—	2026	→
CDK12/CDK13 inhibition disrupts transcriptional elongation and replication fork progression in glioblastoma.	Lier S et al.	—	2026	→
Cdkn2a/p16Ink4a loss impairs Spatial memory independently of Alzheimer's-associated genetic pathways in young adult mice.	Stephan P et al.	—	2026	→
Chromosome-Level Genome Assembly and Annotation of Piptanthus nepalensis (Hook.) Sweet.	Zhang J et al.	—	2026	→
Clinical metagenomics for diagnosis and surveillance of viral pathogens.	Torres Montaguth OE et al.	—	2026	→
Coccidiosis prevention strategies shape the microbiome, resistome and mobilome composition in the broiler gut.	Buffoni M et al.	—	2026	→
Comparative Analysis of HEK293 Genomic Variability.	Smesnik G et al.	—	2026	→
Comparative genomic analyses shed light on the introduction routes of rice-pathogenic Burkholderia gladioli strains into Bangladesh.	Protic IA et al.	—	2026	→
Convergent genome evolution shaped the emergence of terrestrial animals.	Wei J et al.	—	2026	→
Database of recurrent mutations, an unbiased web resource to browse recurrent mutations in cancers.	Chakroborty D et al.	—	2026	→
Deciphering DST-associated disorders: biallelic variants affecting DST-b cause a congenital myopathy.	Jacob M et al.	—	2026	→
Deciphering the 3D genome organization across species from Hi-C data.	Shkolikov A et al.	—	2026	→
Differential translocation of bacteriophages across the intestinal barrier in health and Crohn's disease.	Douadi C et al.	—	2026	→
Disordered N-termini enhance the thermostability of SGNH-hydrolase family polyesterases.	Ahmed FH et al.	—	2026	→
Diversification of Tridecaptin Chemical Space via a Chimeric Biosynthetic Pathway in <i>Paenibacillus</i>.	Machushynets NV et al.	—	2026	→
Doing more with less: Genomic quasi-G-primes differentiate septic from healthy patients.	Sha CM et al.	—	2026	→
Draft genome sequence of epiphytic <i>Bacillus safensis</i> strain Cap07D, isolated from <i>Chenopodium album</i> L. seeds.	Chebotar VK et al.	—	2026	→
Druggable targets and immunological mechanisms for type 1 diabetes treatment: Genetic evidence from multi-omics Mendelian randomization combined with meta-analysis.	Mei X et al.	—	2026	→
Dual-kingdom necrobiome succession extends postmortem interval estimation into skeletonization.	Tièche EP et al.	—	2026	→
Dysbiotic shift in the oral microbiota of patients with Alzheimer's disease compared to their healthy life partners-a combinatorial approach and a paired study design.	Weber C et al.	—	2026	→
Early prediction of gestational diabetes mellitus with clinical characteristics, cell-free DNA and genetic variants.	Chen S et al.	—	2026	→
EasyAmplicon 2: Expanding PacBio and Nanopore Long Amplicon Sequencing Analysis Pipeline for Microbiome.	Luo H et al.	—	2026	→
Efficient detection and typing of phage-plasmids.	Ilchenko K et al.	—	2026	→
Emergence and Tandem Repeat-Mediated Elongation of a Translated De Novo Open Reading Frame in Human Oncogenic RNA Gene VPS9D1-AS1 (MYU).	Chou L et al.	—	2026	→
Enhanced Detection of Splice-Altering Variants in Hematologic Malignancies Using Targeted RNA-Sequencing Data.	Maqsood M et al.	—	2026	→
Enhanced pathogen detection and gut microbiome alterations in pyogenic liver abscess: insights from next-generation sequencing.	Song JS et al.	—	2026	→
Epigenetic biomarkers of mortality risk in mice under chronic social stress.	Anderson SD et al.	—	2026	→
Epithelial remodeling and microbial dysbiosis in the lower respiratory tract of vitamin A-deficient mouse lungs.	Quiles KR et al.	—	2026	→
Essentiality and dynamic expression of the human tRNA pool during viral infection.	Aharon-Hefetz N et al.	—	2026	→
Evidence that extra copies of chromosome 1q play a role in the early phases of pancreatic neoplasia.	Douville C et al.	—	2026	→
Evolutionary Insights from Sequence Analysis of Interleukin 17A (IL17A).	Santos JC	—	2026	→
Evolutionary transcriptomics unveils rapid changes of gene expression patterns in flowering plants.	Schuster C et al.	—	2026	→
Expanded Gene Targeting in RNA Hacking With G-Tract-Supply Staple Oligomers.	Kida T et al.	—	2026	→
Fibrinogen αC-Domain Derived From Group 1 Allergen of Dermatophagoides microceras Modulates Cell Adhesion in Human Bronchial Epithelial Cells.	Lin CY et al.	—	2026	→
Filtering for truth: high-precision taxonomic classification in nanopore shotgun metagenomics data through a KMA-based bioinformatic pipeline (KAPTAIN).	Van Uffelen A et al.	—	2026	→
Gene4Denovo2: an updated platform for human de novo mutations discovery and interpretation.	Zhu Z et al.	—	2026	→
Generative AI for synthetic biology: Designing biological parts, circuits, and genomes.	Kim N et al.	—	2026	→
Genetic Features of the Scuticociliate Pathogen Philaster sp. Isolate FWC2 That Causes Sea Urchin Mass Mortality.	Lim SJ et al.	—	2026	→
Genome assembly of Helan Shan pika (Ochotona argentata): a key resource for endangered species conservation.	Meng H et al.	—	2026	→
Genomic Differentiation, Diversity, and Genetic Structuring of <i>Euterpe edulis</i> Mart. Morphotype in Espírito Santo, Brazil.	Santos JG et al.	—	2026	→
Genomic dissection of the clonal background and global dissemination of hypervirulent Klebsiella pneumoniae CG23-KL57 lineage.	Li S et al.	—	2026	→
Geometrically Encoded Positioning of Introns, Intergenic Segments, and Exons in the Human Genome.	Almassalha LM et al.	—	2026	→
High-resolution differentiation and identification of the clinically relevant pathogens <i>Haemophilus influenzae</i> and <i>Haemophilus aegyptius</i>: combined whole-cell MALDI-TOF MS and nano-LC-MS/MS proteotyping for defining protein biomarkers.	Hamidi H et al.	—	2026	→
Host whole genome sequence data represent an untapped resource for characterising affiliated parasite diversity.	Nichols S et al.	—	2026	→
Hyperendemicity of Rift Valley Fever in Southwestern Uganda Associated With the Rapidly Evolving Lineage C Viruses.	Bakamutumaho B et al.	—	2026	→
Identification of novel metagenomic lipases through integrated structural and sequence-based analysis.	Jaito N et al.	—	2026	→
Identification of pathogenic fungi causing ocular infections using full rRNA operon sequencing with Oxford Nanopore Technologies.	Suwannasaeng T et al.	—	2026	→
Implications of Codon Usage, tRNA Gene Redundancy and tRNA Gene Clustering in Experimental Models of Mistranslation.	McDonald DW et al.	—	2026	→
Integrative pan-resistome and transcriptomic characterization reveals differential gene expression signatures in carbapenem-resistant Acinetobacter baumannii: Insights into efflux pump regulation and therapeutic targeting strategies.	Gopikrishnan M et al.	—	2026	→
<i>Streptomyces anthophorae</i> sp. nov. and <i>Streptomyces nidicola</i> sp. nov., novel actinobacteria isolated from a solitary bee.	Christensen SM et al.	—	2026	→
KEGGaNOG: A Lightweight Tool for KEGG Module Profiling From Orthology-Based Annotations.	Popov IV et al.	—	2026	→
Large-scale multi-omic biosequence transformers for modeling protein-nucleic acid interactions.	Chen SF et al.	—	2026	→
Levels of Analysis in Evolutionary Genetics: Novel Genes and the Misuse of Homology.	Johnson BR	—	2026	→
Long-read sequencing for bacterial plasmid analysis: a brief overview.	van Almsick V et al.	—	2026	→
Long-Term Preservation of Humid Earthen Sites: Shelter Efficacy, Essential Oil Dynamics, and Microbial Adaptation.	Zhu C et al.	—	2026	→
Low-level arsenic species exposure and plasma lncRNA signature in healthy Chinese adults: A profile and functional analysis.	Lin T et al.	—	2026	→
LSKL mitigates dehydroepiandrosterone-induced apoptosis and oxidative stress by THBS1/PI3K/AKT pathway in rat granulosa cells.	Zhang L et al.	—	2026	→
<i>PhyloRef</i>: A Semi-Automated Workflow for eDNA Reference Database Curation via Phylogenetic Anomaly Detection.	Mai Y et al.	—	2026	→
Manual curation of aquatic fungal ITS2 metabarcoding OTU matrices increases community identification on the genus and species level.	Baschien C et al.	—	2026	→
Massively parallel reporter assay for mapping gene-specific regulatory regions at single-nucleotide resolution.	Tulloch AJ et al.	—	2026	→
metagRoot: a comprehensive database of protein families associated with plant root microbiomes.	Chasapi MN et al.	—	2026	→
Microbiome by transcriptome interactions triggered by a switch to an alternative diet in Nellore cattle.	Fernandes AC et al.	—	2026	→
Mining for Mitochondria: 68 Mitogenomes for Wrasses and Parrotfishes (F: Labridae) From Off-Target UCE Data.	Swami AV et al.	—	2026	→
MPXV RNA-seq data provide evidence for protection of viral transcripts from APOBEC3 editing.	Lyskova AO et al.	—	2026	→
Mutual antagonism between PRC1 condensates and SWI/SNF in chromatin regulation.	Niekamp S et al.	—	2026	→
nf-core/proteinfamilies: a scalable pipeline for the generation of protein families.	Karatzas E et al.	—	2026	→
Nitrogen pollution alters bacterial carbonate mineralization potential in karst river.	Mo J et al.	—	2026	→
Oncogenicity Variant Interpreter: Oncogenicity Guidelines Implementation to Support Somatic Variants Interpretation in Precision Oncology.	Carta MG et al.	—	2026	→
Orthrus: toward evolutionary and functional RNA foundation models.	Fradkin P et al.	—	2026	→
Oxygen reductase origin followed the great oxidation event and terminated the Lomagundi excursion.	Trost K et al.	—	2026	→
PenCards: a global and community-contributed public archive of variant penetrance.	Zhu Z et al.	—	2026	→
Persistence of protozoan parasites and <i>Escherichia coli</i> on plant tissue in soil.	McCaughan KJ et al.	—	2026	→
Phylogenetic Analysis of NEAT1 and MALAT1 Long Non-Coding RNAs Highlights Structure-Function Relationships in Paraspeckle Biology.	Arkhipova K et al.	—	2026	→
Pigments, Chromatophore Structure, and Gene Expression Underlying Colour Polytypy of a Panamanian Poison Frog.	Mantzana-Oikonomaki V et al.	—	2026	→
PlasRAG: comprehensive plasmid characterization and retrieval through sequence-text alignment.	Ji Y et al.	—	2026	→
PolyA_DB v4: systematic polyA site identification and isoform annotation in human and mouse genomes using 3' end and long-read sequencing data.	Yu S et al.	—	2026	→
Precursors of sea star wasting: immune and microbial disruption during initial disease outbreak in southeast Alaska.	McCracken AR et al.	—	2026	→
Probing the zooarchaeological record across time and space for ancient pathogen DNA.	W Runge AK et al.	—	2026	→
Prognosis of Korean patients with familial adenomatous polyposis who did not undergo colectomy: a retrospective study.	Kwon MK et al.	—	2026	→
Protein foundation models: a comprehensive survey.	Xu H et al.	—	2026	→
Protein tandem repeats that produce frameshifts can generate new structural states and functions.	Osmanli Z et al.	—	2026	→
Radical enzymatic peptide cyclization in natural product biosynthesis.	Yao Z et al.	—	2026	→
Rare taxa modulate the emergence of dominants in microbial communities.	Wang J et al.	—	2026	→
Scalable homology detection with ERAST.	Jiang Y et al.	—	2026	→
scBrainScope: cross-species multidimensional brain atlas.	Qin S et al.	—	2026	→
scGeneBank: cross-species screening of functional gene sets at single-cell resolution.	Qin S et al.	—	2026	→
Serum Growth Differentiation Factor 8 (Myostatin) Concentrations in Cats with Early-Stage Chronic Kidney Disease.	Fleming K et al.	—	2026	→
Slow RNAPII elongation enhances naive pluripotency rewiring while maintaining high replication fork speed.	Martín-Vírgala S et al.	—	2026	→
Spatial heterogeneity of viral communities across the gastrointestinal tracts of ruminants.	Zhang S et al.	—	2026	→
Species-level dynamics of gastric microbiome after Helicobacter pylori eradication in high-risk Mongolian population.	Renchinsengee N et al.	—	2026	→
Stage-specific impacts of a simulated natural heatwave on Aedes albopictus.	Alfaro C et al.	—	2026	→
Strain-level metagenomic profiling using pangenome graphs with PanTax.	Zhang W et al.	—	2026	→
Systematic multi-reference vertebrate ACE2 sequence similarity analysis predicts species susceptibility to SARS-related sarbecoviruses.	Frank JA et al.	—	2026	→
Ten quick tips for using the NIH Comparative Genomics Resource.	Tvedte ES et al.	—	2026	→
'The genome assemblies of the Tui chub, Siphateles bicolor, and Arroyo Chub, Gila orcuttii'.	Baker HK et al.	—	2026	→
The role of low-complexity repeats in RNA-RNA interactions and a deep learning framework for duplex prediction.	Setti A et al.	—	2026	→
Tracing the molecular evolution of Foxp2 proteins in vertebrates from fish to tetrapods: Insights into poly-Q tract variation, structural changes, and interaction networks.	Köseoğlu AE et al.	—	2026	→
Translation Signature Scores: Data-Driven Approach to Assess Evidence for Active Translation.	Menon D et al.	—	2026	→
tRNA modification landscapes in streptococci: shared losses and clade-specific adaptations.	Tsui HT et al.	—	2026	→
Unbiased DNA Pathogen Detection in Tissues: Real-World Experience With Metagenomic Sequencing in Pathology.	Hamelin B et al.	—	2026	→
Unraveling small non-coding RNAs with a significant post-transcriptional impact on breast cancer cell signaling, using a combinational sequencing approach.	Katsaraki K et al.	—	2026	→
ViMOP: a user-friendly and field-applicable pipeline for untargeted viral genome nanopore sequencing.	Petersen NP et al.	—	2026	→
Whole-blood transcriptomic response to whole-body hyperthermia in participants with major depressive disorder.	Akonom TN et al.	—	2026	→
3D Genome Constrains Breakpoints of Inversions That Can Act as Barriers to Gene Flow in the Stickleback.	Yamasaki YY et al.	—	2025	→
4-Hydroxyboesenbergin B of Alpinia japonica protected gastrointestinal tract by inhibiting vancomycin-resistant enterococcus and balancing intestinal microbiota.	Mei LN et al.	—	2025	→
50,000 years of evolutionary history of India: Impact on health and disease variation.	Kerdoncuff E et al.	—	2025	→
A 3D Genome Atlas of Genetic Variants and Their Pathological Effects in Cancer.	Tang L et al.	—	2025	→
A BAC-guided haplotype assembly pipeline increases the resolution of the virus resistance locus CMD2 in cassava.	Cornet L et al.	—	2025	→
A bacterial toxin-antitoxin system involved in an unusual response to genotoxic stress.	Lin JD et al.	—	2025	→
Accumulation of numerous cellular T-DNA sequences in the genus Diospyros by multiple rounds of natural transformation.	Otten L et al.	—	2025	→
A comparative genomic analysis at the chromosomal-level reveals evolutionary patterns of aphid chromosomes.	Huang C et al.	—	2025	→
A Comprehensive Bioinformatics Approach to Analysis of Variants: Variant Calling, Annotation, and Prioritization.	Koroglu MN et al.	—	2025	→
A comprehensive spatio-cellular map of the human hypothalamus.	Tadross JA et al.	—	2025	→
Adaptive adjustment of profile HMM significance thresholds improves functional and metabolic insights into microbial genomes.	Kananen K et al.	—	2025	→
Addition of Ianalumab (VAY736) to Ibrutinib in Patients with Chronic Lymphocytic Leukemia on Ibrutinib Therapy: Results from a Phase Ib Study.	Rogers KA et al.	—	2025	→
Admixture as a source for HLA variation in Neolithic European farming communities.	da Silva NA et al.	—	2025	→
Advancements and challenges in bioinformatics tools for microbial genomics in the last decade: Toward the smart integration of bioinformatics tools, digital resources, and emerging technologies for the analysis of complex biological data.	Houmenou CT et al.	—	2025	→
Advances in the discovery and study of <i>Trichoderma</i> natural products for biological control applications.	Jin S et al.	—	2025	→
Advancing metagenomic classification with NABAS+: a novel alignment-based approach.	Takács B et al.	—	2025	→
A foundation language model to decipher diverse regulation of RNAs.	Zhou H et al.	—	2025	→
A genotype-first approach identifies high incidence of NF1 pathogenic variants with distinct disease associations.	Safonov A et al.	—	2025	→
Aging promotes reactivation of the Barr body at distal chromosome regions.	Hoelzl S et al.	—	2025	→
A global perspective on autoinducer-2-mediated cell communication in prokaryotes.	Liu X et al.	—	2025	→
A high-throughput and time-efficient Nanopore full-length 16S rRNA gene sequencing protocol for synthetic microbial communities.	Zhou X et al.	—	2025	→
AI-guided discovery and optimization of antimicrobial peptides through species-aware language model.	Bae D et al.	—	2025	→
A library of avian proteins improves palaeoproteomic taxonomic identification and reveals widespread intraspecies variability.	Codlin MC et al.	—	2025	→
Allele-specific genomics decodes gene targets and mechanisms of the non-coding genome.	Hasenbein TP et al.	—	2025	→
A lossless reference-free sequence compression algorithm leveraging grammatical, statistical, and substitution rules.	Roy S et al.	—	2025	→
AlphaFold Database Structure Extractor: a web server and API to download AlphaFold structures using common protein accessions.	Saraf N et al.	—	2025	→
A Metagenomic Survey of Virological Hazards in Market-Ready Oysters.	Dirks RAM et al.	—	2025	→
A modular pipeline for evidence-integrated genome annotation across species: A case study on Schmidtea mediterranea.	Zaremba A et al.	—	2025	→
A multi-isolate genomic approach identifies diverse <i>Escherichia coli</i> contamination and antimicrobial resistance carriage on retail foods.	Astorga G et al.	—	2025	→
A multi-modal transformer for cell type-agnostic regulatory predictions.	Javed N et al.	—	2025	→
Analysis of Proteome Dynamics in Early-Stage Sporulation-Inhibited Variants of <i>Parageobacillus thermoglucosidasius</i>.	Millgaard M et al.	—	2025	→
Analysis of the cross-study replicability of tuberculosis gene signatures using 49 curated human transcriptomic datasets.	Wang X et al.	—	2025	→
An atlas of bacterial serine-threonine kinases reveals functional diversity and key distinctions from eukaryotic kinases.	O'Boyle B et al.	—	2025	→
Ancient trans-species polymorphism at the Major Histocompatibility Complex in primates.	Fortier AL et al.	—	2025	→
A new quantitative PCR assay for detection of potentially anatoxin-producing cyanobacteria.	Jablonska M et al.	—	2025	→
An insight into the draft genome of the Oriental rat flea, Xenopsylla cheopis, together with its Wolbachia endosymbiont.	Lu S et al.	—	2025	→
Annotation of protein-coding genes in 49 diatom genomes from the Bacillariophyta clade.	Nenasheva N et al.	—	2025	→
A novel generative framework for designing pathogen-targeted antimicrobial peptides with programmable physicochemical properties.	Zhao W et al.	—	2025	→
Antibacterial ADP-ribosyl cyclase toxins inhibit bacterial growth by rapidly depleting NAD(P)<sup/>.	Colautti J et al.	—	2025	→
AP2M1 Is a Candidate Gene for Microcephaly and Intellectual Disability in 3q27.1 Deletions.	Gear R et al.	—	2025	→
A phylogenetic approach to comparative genomics.	Dewar AE et al.	—	2025	→
Application of Metagenomic Long-Read Sequencing for the Diagnosis of Herpetic Uveitis.	Koyanagi Y et al.	—	2025	→
Applying the Classic Test dN/dS to Detect Selection in Archaea.	Martinez-Gutierrez CA et al.	—	2025	→
Approaching the sterile womb theory in dogs and cats: A multi-technique investigation.	Banchi P et al.	—	2025	→
A quantitative comparison of the deleteriousness of missense and nonsense mutations using the structurally resolved human protein interactome.	Su TY et al.	—	2025	→
A rare splice-site variant in TNNT2: the need for ancestral diversity in genomic reference data sets.	Butters A et al.	—	2025	→
A reproducible ddRAD-seq protocol reveals novel genomic association signatures for fruit-related traits in peach.	Ksouri N et al.	—	2025	→
A review of neural networks for metagenomic binning.	Herazo-Álvarez J et al.	—	2025	→
Arsenic Accumulation in Microbial Biomass and the Interpretation of Signals of Early Arsenic-Based Metabolisms.	Madrigal-Trejo D et al.	—	2025	→
A scoping review of human genetic resources management policies and databases in high- and middle-low-income countries.	Liu H et al.	—	2025	→
ASpdb: an integrative knowledgebase of human protein isoforms from experimental and AI-predicted structures.	Yang Y et al.	—	2025	→
A species-level identification pipeline for human gut microbiota based on the V3-V4 regions of 16S rRNA.	Wang M et al.	—	2025	→
Associations Between Follicular Fluid Biomarkers and IVF/ICSI Outcomes in Normo-Ovulatory Women-A Systematic Review.	Albeitawi S et al.	—	2025	→
A study of genomic complexity underlying multidrug resistance in Candida auris strains in Thailand.	Opassathian K et al.	—	2025	→
A systematic analysis of contemporary whole exome sequencing capture kits to optimise high-coverage capture of CCDS regions.	López FV et al.	—	2025	→
AttenRNA: multi-scale deep attentive model with RNA feature variability analysis.	Li J et al.	—	2025	→
AUGcontext DB: a comprehensive catalog of the mRNA AUG initiator codon context across eukaryotes.	Osnaya VG et al.	—	2025	→
Bacterial gene 5' ends have unusual mutation rates that can mislead tests of selection.	Radrizzani S et al.	—	2025	→
Bacterial Growth Temperature as a Horizontally Acquired Polygenic Trait.	Farrell AA et al.	—	2025	→
Bacterial sensor evolved by decreasing complexity.	Monteagudo-Cascales E et al.	—	2025	→
Bacteriophages carry auxiliary metabolic genes related to energy, sulfur and phosphorus metabolism during a harmful algal bloom in a freshwater lake.	Bhattarai B et al.	—	2025	→
Bag-of-words is competitive with sum-of-embeddings language-inspired representations on protein inference.	Papadopoulos F et al.	—	2025	→
Beckwith-Wiedemann syndrome and large offspring syndrome involve alterations in methylome, transcriptome, and chromatin configuration.	Li Y et al.	—	2025	→
Beyond White-Nose Syndrome: Mitochondrial and Functional Genomics of <i>Pseudogymnoascus destructans</i>.	Popov IV et al.	—	2025	→
Bgee in 2024: focus on curated single-cell RNA-seq datasets, and query tools.	Bastian FB et al.	—	2025	→
Biogeographic patterns of viral communities, ARG profiles and virus-ARG associations in adjacent paddy and upland soils across black soil region.	Gu H et al.	—	2025	→
Bioinformatic Analysis of Oxalate-Degrading Enzymes in Probiotics: A Systematic Genome-Scale and Structural Survey.	Du S et al.	—	2025	→
Biosurfer for systematic tracking of regulatory mechanisms leading to protein isoform diversity.	Murali M et al.	—	2025	→
BMAL1-TRIM28 represses transposable elements independently of CLOCK in pluripotent cells.	Gallardo A et al.	—	2025	→
Bone Adhered Sediments as a Source of Target and Environmental DNA and Proteins.	de-Dios T et al.	—	2025	→
Bronze Age Yersinia pestis genome from sheep sheds light on hosts and evolution of a prehistoric plague lineage.	Light-Maka I et al.	—	2025	→
Candidate imprinting control regions in dog genome.	Wyss P et al.	—	2025	→
Cell division protein CdpA organises and anchors the midcell ring in haloarchaea.	Liao Y et al.	—	2025	→
Cell-Specific Gene Expressions Underlie Selective White Matter Loss Vulnerability in Mild Traumatic Brain Injury.	Jia X et al.	—	2025	→
Cell wall-resident proteins with internal repeats (PIRs) show an inverted architecture in Neurospora crassa, but maintain their role as wall stabilizers.	Montaño-Silva P et al.	—	2025	→
Changes in Gut Phageome and Bacteriome Following Fecal Microbiota Transfer in Patients with Intestinal Graft-Versus-Host Disease and Crohn's Disease.	Chukhlovin AB et al.	—	2025	→
Characterization and therapeutic potential of newly isolated bacteriophages against <i>Staphylococcus</i> species in bovine mastitis.	Cho J-h et al.	—	2025	→
Characterization of bacterial intrinsic transcription terminators identified with TERMITe-a novel method for comprehensive analysis of Term-seq data.	Kosiński JG et al.	—	2025	→
Characterization of diverse Cas9 orthologs for genome and epigenome editing.	Butterfield GL et al.	—	2025	→
Characterization of <i>Bacillus velezensis</i> EV17 and K-3618 and Their Polyketide Antibiotic Oxydifficidin, an Inhibitor of Prokaryotic Translation with Low Cytotoxicity.	Chernyshova AP et al.	—	2025	→
Characterization of non-coding variants associated with transcription-factor binding through ATAC-seq-defined footprint QTLs in liver.	Dudek MF et al.	—	2025	→
Chemoreceptor family in plant-associated bacteria responds preferentially to the plant signal molecule glycerol 3-phosphate.	Velando F et al.	—	2025	→
Chevreul: an R bioconductor package for exploratory analysis of full-length single cell sequencing.	Stachelek K et al.	—	2025	→
Chimeric mis-annotations of genes remain pervasive in eukaryotic non-model organisms.	Bachler A et al.	—	2025	→
ChromActivity: integrative epigenomic and functional characterization assay based annotation of regulatory activity across diverse human cell types.	Dincer TU et al.	—	2025	→
Chromatin accessibility landscape of mouse early embryos revealed by single-cell NanoATAC-seq2.	Li M et al.	—	2025	→
Chromatin repression by PRC2 results in reduced gene expression driving key features of CD8 T cell exhaustion.	Samareh P et al.	—	2025	→
Chromosome level de Novo hybrid assembly of Asian honeybee, Apis cerana Koreana.	Lee JH et al.	—	2025	→
Chromosome-Level Genome Assembly of the Asian Tramp Snail Bradybaena similaris (Stylommatophora: Camaenidae).	Ishii Y et al.	—	2025	→
Chromosome-level genome assembly of the obligate cave loach Troglonectes daqikongensis.	Bing H et al.	—	2025	→
Chromosome-level genome assembly of the Vermilion Snapper (Rhomboplites aurorubens).	Roa-Varón A et al.	—	2025	→
Chromosome level genome assembly of 'Wanfeng' almond (Prunus dulcis).	Zhang D et al.	—	2025	→
Chromosome-level genome of Zoysia sinica in the intertidal zone reveals genomic insights into waterlogging stress adaptation.	Park H et al.	—	2025	→
Chromosome-level reference genome for the Jonah crab, Cancer borealis.	Polinski JM et al.	—	2025	→
Chromosome-scale genome assembly and gene annotation of the hydrothermal vent annelid Alvinella pompejana yield insight into animal evolution in extreme environments.	Hilali SE et al.	—	2025	→
Clinical Bioinformatician Body of Knowledge-Bioinformatics and Software Core: A Report of the Association for Molecular Pathology.	Kadri S et al.	—	2025	→
Clinical carbapenem-resistant <i>Enterobacterales</i> in a University Hospital in Dakar, Senegal: genomic insights into <i>Enterobacter hormaechei</i> ST182 strains carrying <i>bla</i><sub>NDM-5</sub> and <i>bla</i><sub>OXA-48</sub> genes .	Dossouvi KM et al.	—	2025	→
Coconut rhinoceros beetle, Oryctes rhinoceros (Coleoptera: Scarabaeidae), larval frass as plant fertilizer.	Han CJ et al.	—	2025	→
CocoVax: a web server for codon-based deoptimization of viral genes in live attenuated vaccine design.	Li J et al.	—	2025	→
Combining DNA and protein alignments to improve genome annotation with LiftOn.	Chao KH et al.	—	2025	→
Commercial milk kefir exerts immunomodulatory TLR-mediated responses on in vitro models of the human intestinal epithelium.	Moriano-Gutierrez S et al.	—	2025	→
Common non-antibiotic drugs enhance selection for antimicrobial resistance in mixture with ciprofloxacin.	Hayes A et al.	—	2025	→
Comparative analysis of amphibian genomes: An emerging resource for basic and applied research.	Kosch TA et al.	—	2025	→
Comparative Analysis of Drosophila Bam and Bgcn Sequences and Predicted Protein Structural Evolution.	Arnce LR et al.	—	2025	→
Comparative Genomics and Phylogenomics of Novel Radiation-Resistant Bacterium <i>Paracoccus qomolangmaensis</i> sp. nov. S3-43<sup>T</sup>, Showing Pyrethroid Degradation.	Liu Y et al.	—	2025	→
Comparative Genomics Points to Ecological Drivers of Genomic Divergence Among Intertidal Limpets.	Giles EC et al.	—	2025	→
Comparison of pharyngeal and invasive isolates of <i>Streptococcus pyogenes</i> by whole-genome sequencing in Toronto, Canada.	Zeppa JJ et al.	—	2025	→
Complete human recombination maps.	Palsson G et al.	—	2025	→
Completing the BASEL phage collection to unlock hidden diversity for systematic exploration of phage-host interactions.	Humolli D et al.	—	2025	→
Complex genetic variation in nearly complete human genomes.	Logsdon GA et al.	—	2025	→
Comprehensive bioinformatics analysis of hub genes in ischemic heart failure and atrial fibrillation.	Zhou M et al.	—	2025	→
Comprehensive discovery of m<sup>6</sup>A sites in the human transcriptome at single-molecule resolution.	Kang G et al.	—	2025	→
Comprehensive visceral transcriptome profiling of three pig breeds along altitudinal gradients in Yunnan.	Huo J et al.	—	2025	→
Computational inference of Rhizobium phaseoli transcriptional regulatory network predicts Transcription Factors involved in nodulation.	Hernandez-Benitez EM et al.	—	2025	→
Computational modeling of oxytocin-receptors interactions with the common marmoset Callithrix jacchus Pro8OT variant.	Veber B et al.	—	2025	→
Conflicting Kinesin-14s in a single chromosomal drive haplotype.	Brady MJ et al.	—	2025	→
Conformational changes in ketohexokinase are conserved across isozymes and species.	Bae SY et al.	—	2025	→
Connecting genes to physiology: the first 25 years of <i>Physiological Genomics</i>.	Joe B et al.	—	2025	→
Conservation assessment of human splice site annotation based on a 470-genome alignment.	Minkin I et al.	—	2025	→
Convergence of plasmid-driven virulence and antibiotic resistance in Escherichia coli.	Lian ZJ et al.	—	2025	→
Convergent Evolution of Two Dopamine Receptor Genes: Repeated Evolution of Exon 6 Skipping in Drd2, and Repeated Deletion of Exon 6 in Drd3.	Peglar MT et al.	—	2025	→
Creating unity: linking 16S rRNA gene sequence information to the core taxonomy of genomes.	Vinje H et al.	—	2025	→
CRISPRepi: a multi-omic atlas for CRISPR-based epigenome editing.	Shi L et al.	—	2025	→
Crop root bacterial and viral genomes reveal unexplored species and microbiome patterns.	Dai R et al.	—	2025	→
CSEL-BGC: A Bioinformatics Framework Integrating Machine Learning for Defining the Biosynthetic Evolutionary Landscape of Uncharacterized Antibacterial Natural Products.	Du M et al.	—	2025	→
Culturable bacteria associated with Anastrepha fraterculus sp. 1: in search of nitrogen-fixing symbionts with biotechnological potential.	Salgueiro J et al.	—	2025	→
Culture-supported ecophysiology of the SAR116 clade demonstrates metabolic and spatial niche partitioning.	Coelho JT et al.	—	2025	→
Current state and future prospects of Horizontal Gene Transfer detection.	Wijaya AJ et al.	—	2025	→
CUT&Tag recovers up to half of ENCODE ChIP-seq histone acetylation peaks.	Abbasova L et al.	—	2025	→
Cyanobacterial Argonautes and Cas4 family nucleases cooperate to interfere with invading DNA.	Bobadilla Ugarte P et al.	—	2025	→
Deciphering enzymatic potential in metagenomic reads through DNA language models.	Prabakaran R et al.	—	2025	→
Decoding the general role of tRNA queuosine modification in eukaryotes.	Díaz-Rullo J et al.	—	2025	→
Decoding the Genome of the Komagataella phaffii Type Strain CBS 2612.	Tatto NE et al.	—	2025	→
Decomposition of the pangenome matrix reveals a structure in gene distribution in the <i>Escherichia coli</i> species.	Chauhan SM et al.	—	2025	→
Deep generative models design mRNA sequences with enhanced translational capacity and stability.	Zhang H et al.	—	2025	→
Design and validation of a clinical whole genome sequencing-based assay for patient screening in a large healthcare system.	Wagner JT et al.	—	2025	→
Detection of chimeric alpha-defensin transcripts and peptides in mouse Paneth cells.	Timmermans S et al.	—	2025	→
Detection of hemizygous deletions in the genome of Fleckvieh cattle using SNP chip data and the concept of Mendelian mismatches in parent-offspring pairs.	Dekar T et al.	—	2025	→
Detection of <i>Bacillus</i> production strains and contaminants in food enzyme products.	Van Uffelen A et al.	—	2025	→
Detection of <i>Clostridium sporogenes</i> in a Roman-era cattle mass grave at Vilauba.	Myburgh DA et al.	—	2025	→
Development and Characterization of the NISTCHO Reference Cell Line.	Dahodwala H et al.	—	2025	→
Diagnostic performance and clinical utility of metagenomic next-generation sequencing in suspected central nervous system infections: a prospective comparative study.	Cao XG et al.	—	2025	→
Diets shape thermal responses in Chinese giant salamanders by altering liver metabolism.	Zhai R et al.	—	2025	→
Differences in GenBank and RefSeq annotations may affect genomics data interpretation for <i>Pseudomonas putida</i> KT2440.	de Siqueira GMV et al.	—	2025	→
Differential effect of monoterpenes and flavonoids on the transcription of aromatic ring-hydroxylating dioxygenase genes in <i>Rhodococcus opacus</i> C1 and <i>Rhodococcus</i> sp. WAY2.	Zubrova A et al.	—	2025	→
Direct reprogramming of mouse fibroblasts into self-renewable alveolar epithelial-like cells.	Morita A et al.	—	2025	→
Discordance Down Under: Combining Phylogenomics and Fungal Symbioses to Detangle Difficult Nodes in a Diverse Tribe of Australian Terrestrial Orchids.	O'Donnell RP et al.	—	2025	→
Discovering Intron Gain Events in Humans Through Large-Scale Evolutionary Comparisons.	Hoh C et al.	—	2025	→
Discovery of novel hammerhead, twister, and DVRz-associated circular RNAs in <i>Vitaceae</i>, <i>Solanaceae,</i> and <i>Rosaceae</i>.	Raza A et al.	—	2025	→
Disruption of SETD3-mediated histidine-73 methylation by the BWCFF-associated β-actin G74S mutation.	Marquardt A et al.	—	2025	→
Distribution of Antibiotic Resistance Genes in <i>Kocuria</i> Species.	Pleshko EM et al.	—	2025	→
Distribution of bacterial DNA repair proteins and their co-occurrence with immune systems.	Mutte SK et al.	—	2025	→
Diverse, Cryptic, and Undescribed: Club and Coral Fungi in a Temperate Australian Forest.	McPherson VJ et al.	—	2025	→
Diverse somatic genomic alterations in single neurons in chronic traumatic encephalopathy.	Dong G et al.	—	2025	→
DNA Methylation in Alzheimer's Disease.	Weymouth L et al.	—	2025	→
DNA mutagenesis driven by transcription factor competition with mismatch repair.	Zhu W et al.	—	2025	→
Dominance of Zygosaccharomyces and shifts in bacterial pathways: Effects of antimicrobials on composition and diversity of the Ceratitis capitata bacterial and fungal microbiome.	Rasuk MC et al.	—	2025	→
Dose-Limiting Toxicities and the Maximum Tolerated Dose of Irinotecan Based on <i>UGT1A1</i> Genotypes: A Systematic Review.	Díaz-Villamarín X et al.	—	2025	→
Double optimal transport for differential gene regulatory network inference with unpaired samples.	Li M et al.	—	2025	→
Draft genome sequence of endophyte <i>Bacillus atrophaeus</i> strain Adn01S isolated from <i>Agropyron desertorum</i> (Fish.ex Link) Schuit stem.	Chebotar VK et al.	—	2025	→
Draft genome sequence of endophyte <i>Bacillus halotolerans</i> strain Can19L, isolated from the <i>Chenopodium album</i> L. leaves.	Chebotar VK et al.	—	2025	→
Draft genome sequence of the epiphytic <i>Bacillus pumilus</i> strain App11D isolated from the surface of <i>Alhagi pseudoalhagi</i> (Bieb.) Fisch. seeds.	Chebotar VK et al.	—	2025	→
Early-life development of the gut virome and plasmidome: A longitudinal study in cesarean-born infants.	Fernández-Pato A et al.	—	2025	→
Ecological strategies of bacteria shape inherent phage diversity in Atlantic salmon gut microbiomes.	Winther-Have CS et al.	—	2025	→
Effect of intra- and inter-specific plant interactions on the rhizosphere microbiome of a single target plant at different densities.	Newberger DR et al.	—	2025	→
Efficient and accurate search in petabase-scale sequence repositories.	Karasikov M et al.	—	2025	→
Elexacaftor-Tezacaftor-Ivacaftor Improves Sinonasal Outcomes in Young Children With Cystic Fibrosis.	Stapleton AL et al.	—	2025	→
Emergence of alternative states in a synthetic human gut microbial community.	Garza DR et al.	—	2025	→
EnhancerMatcher: comparing cell-type-specific enhancer activity of DNA sequences using deep convolutional neural networks and explainable AI.	Solis LM et al.	—	2025	→
Enhancing transcriptome expression quantification through accurate assignment of long RNA sequencing reads with TranSigner.	Ji HJ et al.	—	2025	→
Enkephalin-producing regulatory T cells in the skin restrain local inflammation through control of nociception.	Mendoza A et al.	—	2025	→
Environmental adaptations in metagenomes revealed by deep learning.	Winder JC et al.	—	2025	→
Environmental exposures associated with the gut microbiome and resistome of pregnant women and children in Northwest Ecuador.	Cotto I et al.	—	2025	→
Epidemiologic and Genomic Characterization of an Outbreak of Rift Valley Fever Among Humans and Dairy Cattle in Northern Tanzania.	Madut DB et al.	—	2025	→
Epigenetic alterations facilitate transcriptional and translational programs in hypoxia.	Watt K et al.	—	2025	→
Epseptimavirus KKP3831 - a new species of Salmonella-specific virulent phage: comprehensive biological and genomic characterization and potential for translocation through the intestinal epithelium.	Wójcicki M et al.	—	2025	→
ESKAPE pathogens rapidly develop resistance against antibiotics in development in vitro.	Daruka L et al.	—	2025	→
ESR1 Variants and Subcontinental Genomic Ancestry: Insights from the 1000 Genomes Project and Native American Populations.	Scudeler MM et al.	—	2025	→
Evaluating computational tools for protein-coding sequence detection: Are they up to the task?	Champion DJ et al.	—	2025	→
Evaluation of functional capacity and plastic-degrading potential of Bacillus spp. and other bacteria derived from the Getliņi landfill (Latvia).	Pereira S et al.	—	2025	→
Evaluation of V3-V4 and FL-16S rRNA amplicon sequencing approach for microbiota community analysis of tracheostomy aspirates.	Gupta A et al.	—	2025	→
Evidence for Trace Gas Metabolism and Widespread Antibiotic Synthesis in an Abiotically Driven, Antarctic Soil Ecosystem.	Thompson AR et al.	—	2025	→
Evidence that ribosomal protein bS21 is a component of the OLE ribonucleoprotein complex.	Wencker FDR et al.	—	2025	→
Evolutionary Flexibility of Ribosome Biogenesis in Bacteria.	Amikura K et al.	—	2025	→
Evolution, dissemination, and genetic dynamics of the carbapenem resistance gene <i>bla</i> <sub>NDM</sub> in China.	Hu X et al.	—	2025	→
Evolution of intrinsic disorder in the structural domains of viral and cellular proteomes.	Mughal F et al.	—	2025	→
Evolution of the Plant-Associated Pantoea was Accompanied by Plasmid Domestication Events.	Romero Picazo D et al.	—	2025	→
ExcludonFinder: mapping transcriptional overlaps between neighboring genes.	Sanmartín Á et al.	—	2025	→
Expanding the bioanalytical application of β-hydroxybutyrate binding proteins through characterization of their metabolite interactions and site-directed mutagenesis.	Kane BJ et al.	—	2025	→
Exploring pharmacogenetic factors influencing hydroxyurea response in tanzanian sickle cell disease patients: a genomic medicine approach.	Nkya S et al.	—	2025	→
Exploring the Genetic Diversity, Virulence and Antimicrobial Resistance of Diarrhoeagenic <i>Escherichia coli</i> From Southern Africa Using Whole-Genome Data.	Gichure J et al.	—	2025	→
Exploring the principles behind antibiotics with limited resistance.	Maharramov E et al.	—	2025	→
Exploring the zinc-binding proteins in the mutational hotspots of human cancer.	Chauhan S et al.	—	2025	→
Extensive cultivation of human gut phages revealing undescribed <i>Bacteroidaceae</i> phages.	Liu Z et al.	—	2025	→
Extensive data mining uncovers novel diversity among members of the rare biosphere within the Thermoplasmatota.	Maeke MD et al.	—	2025	→
FACT weakens the nucleosomal barrier to transcription and preserves its integrity by forming a hexasome-like intermediate.	Burgos-Bravo F et al.	—	2025	→
Fetal Corpus Callosum Anomalies: A Review of Underlying Genetic Disorders and Prenatal Testing Options.	Lanzarone V et al.	—	2025	→
Fighting biofilm: bacteriophages eliminate biofilm formed by multidrug-resistant Enterobacter hormaechei on urological catheters.	Cieślik M et al.	—	2025	→
Four near-complete genome assemblies reveal the landscape and evolution of centromeres in Salicaceae.	Wang Y et al.	—	2025	→
From Identification to Insight: Making Full Use of the Diagnostic Potential of MS/MS Proteotyping in Clinical Microbiology Using Efficient Bioinformatics.	Muth T et al.	—	2025	→
From Signal to Symphony: Exploring 2D Sequence Representations for Protein Function Prediction.	Wang Y et al.	—	2025	→
Fully haplotyped genome assemblies of healthy individuals reveal variability in 5'ss strength and support by splicing regulatory proteins.	Ptok J et al.	—	2025	→
Functional characterization of genetic variants affecting the intracellular domains of ATP-binding cassette transporter A1 (ABCA1).	Teigen M et al.	—	2025	→
Function inference of million-scale microbiomes using multi-GPU acceleration.	Zhang Y et al.	—	2025	→
GATA2 mutation is associated with immune dysfunction and increased Mycobacterium haemophilum susceptibility in immunocompromised individuals.	Gupta A et al.	—	2025	→
GENCODE 2025: reference gene annotation for human and mouse.	Mudge JM et al.	—	2025	→
Gencube: centralized retrieval and integration of multi-omics resources from leading databases.	Son KH et al.	—	2025	→
Gene expression profiles based on maternal plasma cfDNA nucleosome footprints indicate fetal development and maternal immunity changes during pregnancy progress.	Zhang M et al.	—	2025	→
Gene expressions of clinical Pseudomonas aeruginosa harboring RND efflux pumps on chromosome and involving a novel integron on a plasmid.	He L et al.	—	2025	→
Genetic and epigenetic regulation of Treg cell fitness by autism-related chromatin remodeler CHD8.	Yang JQ et al.	—	2025	→
Genetic Insights into Brain Morphology: a Genome-Wide Association Study of Cortical Thickness and T<sub>1</sub>-Weighted MRI Gray Matter-White Matter Intensity Contrast.	Kim NJ et al.	—	2025	→
Genetics of ovulatory dysfunction and infertility: a scoping review and gene ontology analysis.	DiPietro EE et al.	—	2025	→
Genetic Variants Associated with Suspected Neonatal Hypoxic Ischaemic Encephalopathy: A Study in a South African Context.	Foden CJ et al.	—	2025	→
Genetic Variations in the P2X7 Receptor: Opportunities and Challenges for Drug Development.	Cheah JSY et al.	—	2025	→
Genome Assembly for the Sierra Nevada Parnassian (Parnassius behrii) and a Brief Review of Butterfly Genome Sizes.	MacDonald ZG et al.	—	2025	→
Genome Assembly of a Living Fossil, the Atlantic Horseshoe Crab Limulus polyphemus, Reveals Lineage-Specific Whole-Genome Duplications, Transposable Element-Based Centromeres, and a ZW Sex Chromosome System.	Castellano KR et al.	—	2025	→
Genome Assembly, Polishing, and Analysis of the Chytrid Batrachochytrium salamandrivorans.	Wacker T et al.	—	2025	→
"Genome-based in silico assessment of biosynthetic gene clusters in Planctomycetota: Evidences of its wide divergent nature".	Calisto R et al.	—	2025	→
Genome Mining and Characterization of Two Novel <i>Lacticaseibacillus rhamnosus</i> Probiotic Candidates with Bile Salt Hydrolase Activity.	Agolino G et al.	—	2025	→
Genome sequencing in a cohort of 32 fetuses with genetic skeletal disorders.	Lindelöf H et al.	—	2025	→
Genomes of the entomopathogenic nematode Steinernema hermaphroditum and its associated bacteria.	Schwarz EM et al.	—	2025	→
Genome-wide analysis of brain age identifies 59 associated loci and unveils relationships with mental and physical health.	Jawinski P et al.	—	2025	→
Genome-wide association study of prostate-specific antigen levels in 392,522 men identifies new loci and improves prediction across ancestry groups.	Hoffmann TJ et al.	—	2025	→
Genome-wide mapping of RNA-protein associations through sequencing.	Qi Z et al.	—	2025	→
Genomic analysis of community-associated methicillin-resistant <i>Staphylococcus aureus</i> (CA-MRSA) causing infections in children-a Spanish multicenter study.	García-Cobos S et al.	—	2025	→
Genomic basis of adaptation to serpentine soil in two Alyssum species shows convergence with Arabidopsis across 20 million years of divergence.	Celestini S et al.	—	2025	→
Genomic characterization of eight novel Bartonella species from bats and ectoparasites reveals phylogenetic diversity and host adaptation.	Wang WJ et al.	—	2025	→
Genomic evidence for flies as carriers of zoonotic pathogens on dairy farms.	Sommer AJ et al.	—	2025	→
Genomic evidence for hybridization and introgression between blue peafowl and endangered green peafowl and molecular foundation of leucistic plumage of blue peafowl.	Wang G et al.	—	2025	→
Genomic Exploration of Essential Hypertension in African-Brazilian Quilombo Populations: A Comprehensive Approach With Pedigree Analysis and Family-Based Association Studies.	Borges VM et al.	—	2025	→
Genomic Features of E. ruysiae Associated with the Ecological Origin: Implications for the Environmental Hypothesis.	Saraceno M et al.	—	2025	→
Genomic GC bias correction improves species abundance estimation from metagenomic data.	Holcik L et al.	—	2025	→
Genomic insights into Streptomyces albidoflavus SM254: tracing the putative signs of anti-Pseudogymnoascus destructans properties.	Popov IV et al.	—	2025	→
Genomic language models with k-mer tokenization strategies for plant genome annotation and regulatory element strength prediction.	Suzuki S et al.	—	2025	→
Genomics for antimicrobial resistance-progress and future directions.	Sherry NL et al.	—	2025	→
Germline Telomere-Regulating Gene Variants Are Not Associated with Thyroid Cancer in a Saudi Arabian Population.	Alzahrani AS et al.	—	2025	→
Giant RNA genomes: Roles of host, translation elongation, genome architecture, and proteome in nidoviruses.	Neuman BW et al.	—	2025	→
Gluconobacter oxydans DSM 50049 - an efficient biocatalyst for oxidation of 5-formyl-2-furancarboxylic acid (FFCA) to 2,5-furandicarboxylic acid (FDCA).	Sayed M et al.	—	2025	→
Guanidine aptamers are present in vertebrate RNAs associated with calcium signaling and neuromuscular function.	Kavita K et al.	—	2025	→
Gut dysbiosis patterns in CVID patients with noninfectious complications observed in a germ-free mouse model through fecal microbiota transplantation.	Hajjar J et al.	—	2025	→
Gut microbiome and cognitive function in the Hispanic Community Health Study/Study of Latinos.	Palacios N et al.	—	2025	→
gymnotoa-db: a database and application to optimize functional annotation in gymnosperms.	Mora-Márquez F et al.	—	2025	→
Habitat prevails over host sex in influencing mycobiome structure of terrestrial isopod, <i>Armadillidium vulgare</i>.	Yang J et al.	—	2025	→
Haplotype-resolved assemblies of the MHC region in five widely used tumor cell lines.	Yuan H et al.	—	2025	→
Haplotype-resolved genome assembly of 'Manhattan' perennial ryegrass (Lolium perenne L.) and characterization of drought responsive late embryogenesis abundant genes.	Robbins MD et al.	—	2025	→
Harmonizing and integrating the NCI Genomic Data Commons through accessible, interactive, and cloud-enabled workflows.	Hung LH et al.	—	2025	→
Harnessing the Biosynthetic Diversity of Actinomycetes: Discovery of Unique Natural Products Through Comparative Genomic and Metabolic Analysis.	Kikuchi Y et al.	—	2025	→
Herpesviruses: overview of systematics, genomic complexity and life cycle.	Dotto-Maurel A et al.	—	2025	→
High level of carbapenem resistance and transmission ability of <i>bla</i><sub>IMP-26</sub> in multidrug-resistant <i>Enterobacter xiangfangensis</i> isolates from China.	Gao Q et al.	—	2025	→
Highly accurate prophage island detection with PIDE.	Gao H et al.	—	2025	→
High-Performance Genome Annotation for a Safer and Faster-Developing Phage Therapy.	Culot A et al.	—	2025	→
High-throughput targeted amplicon screening tool for characterizing intrahost diversity in <i>Staphylococcus aureus</i> directly from sample.	Furstenau TN et al.	—	2025	→
Horizontal acquisition of the Type I restriction-modification system enhances bacterial pathogenicity by mediating methylation of transcription factor-encoding genes.	Ma J et al.	—	2025	→
Horizontal Transfer of Bacterial Operons into Eukaryote Genomes.	Kogay R et al.	—	2025	→
Horizontal transmission of functionally diverse transposons is a major source of new introns.	Gozashti L et al.	—	2025	→
Host cell Z-RNAs activate ZBP1 during virus infections.	Yin C et al.	—	2025	→
Host population dynamics influence Leptospira spp. transmission patterns among Rattus norvegicus in Boston, Massachusetts, US.	Stone NE et al.	—	2025	→
Host-similar fragments in the African swine fever virus genome: distribution, functions, and evolution.	Zhu Z et al.	—	2025	→
HPD-Kit: a comprehensive toolkit for pathogen detection and analysis.	Que T et al.	—	2025	→
Hybrid Capture-Based Sequencing Enables Highly Sensitive Zoonotic Virus Detection Within the One Health Framework.	Mao W et al.	—	2025	→
<i>COL7A1</i> indicates crucial potential as a basal membrane-related prognostic biomarker and therapeutic target in lung adenocarcinoma.	Zhang J et al.	—	2025	→
Identification and characterization of new structured RNA classes in plants.	Sack M et al.	—	2025	→
Identification of Single Nucleotide Polymorphism from Insect Genomic Data.	Lozada-Chávez AN et al.	—	2025	→
Identification of the potential role of PANoptosis-related genes in burns via bioinformatic analyses and experimental validation.	Chen J et al.	—	2025	→
Identification of the shortest species-specific oligonucleotide sequences.	Mouratidis I et al.	—	2025	→
IDRdecoder: a machine learning approach for rational drug discovery toward intrinsically disordered regions.	Shionyu-Mitusyama C et al.	—	2025	→
IgStrand: A universal residue numbering scheme for the immunoglobulin-fold (Ig-fold) to study Ig-proteomes and Ig-interactomes.	Tawfeeq C et al.	—	2025	→
<i>Legionella pneumophila</i> IrsA, a novel, iron-regulated exoprotein that facilitates growth in low-iron conditions and modulates biofilm formation.	Lopez AE et al.	—	2025	→
Immunoinformatics design of an mRNA vaccine against classical swine fever virus using conserved E2 protein and NS3 T-lymphocyte epitopes.	Banico EC et al.	—	2025	→
Impact of changed c-di-AMP levels and hypoosmotic stress on the transcriptome of <i>Haloferax volcanii</i> and on RCK domain-containing proteins.	Ren H et al.	—	2025	→
Impact of diet on the gut mycobiome of Hong Kong Chinese infants.	Fong JYH et al.	—	2025	→
Impact of mycotoxins and glyphosate residue on the gut microbiome and resistome of European fallow deer.	Tóth AG et al.	—	2025	→
Impact of simulation and reference catalogues on the evaluation of taxonomic profiling pipelines.	Puller V et al.	—	2025	→
Improving Individualized Rhabdomyosarcoma Prognosis Predictions Using Somatic Molecular Biomarkers.	Zobeck M et al.	—	2025	→
Improving taxonomic inference from ancient environmental metagenomes by masking microbial-like regions in reference genomes.	Oskolkov N et al.	—	2025	→
Incomplete human reference genomes can drive false sex biases and expose patient-identifying information in metagenomic data.	Guccione C et al.	—	2025	→
Increased burden of rare variants in GWAS associated genes in familial multiple sclerosis.	Turk A et al.	—	2025	→
In-depth functional analysis of BRD9 in fetal hematopoiesis reveals context-dependent roles.	Zhang Y et al.	—	2025	→
Insect Cytochrome P450 Database: An Integrated Resource of Genetic Diversity, Evolution and Function.	Wu H et al.	—	2025	→
Insights into the production of erythritol by strains of <i>Limosilactobacillus fermentum</i> of sourdough origin.	González-Alonso V et al.	—	2025	→
In silico integrative scRNA analysis of human colonic epithelium indicates four tuft cell subtypes.	Herik AI et al.	—	2025	→
Integrated genomic-transcriptomic analysis of clavulanic acid production in differentially productive Streptomyces clavuligerus strains.	Gong J et al.	—	2025	→
Integrated multi-omic analysis unravels the characteristics of the metabolism-related intratumoral microbes and establishes a novel signature for predicting prognosis and therapeutic response in lung adenocarcinoma.	Liu H et al.	—	2025	→
Integrating AI and genomics: predictive CNN models for schizophrenia phenotypes.	Henriques G et al.	—	2025	→
Integrating whole-genome sequencing into antimicrobial resistance surveillance: methodologies, challenges, and perspectives.	Matsumura Y et al.	—	2025	→
Interaction Between Climatic Variation and Pathogen Diversity Shape Endemic Disease Dynamics in the Agricultural Settings.	Bhandari R et al.	—	2025	→
Interplay Between Enteroendocrine Hormone (Leptin) and Adipokines (Ghrelin and Adiponectin) with Gastric Expression of FTO and MC4R Genes.	Hany M et al.	—	2025	→
Interpretation of RNA Universe and Coding Potential Using IntRNA.	Wang Y et al.	—	2025	→
Intratumor heterogeneity of HPV integration in HPV-associated head and neck cancer.	Sasa N et al.	—	2025	→
Intricate interactions between fine-scale genetic structure, lifestyle, and dietary habits in the Japanese population.	Chen Y et al.	—	2025	→
Inversions Dominate Evolution in the European Sardine (Sardina pilchardus) Amid Strong Gene Flow.	Sabatino SJ et al.	—	2025	→
invertiaDB: a database of inverted repeats across organismal genomes.	Provatas K et al.	—	2025	→
Investigating the influence of the SIRT6 gene and alternative splicing on canine longevity: an in-depth bioinformatics analysis and experimental confirmation via NGS-based targeted sequencing.	Özmen Ö et al.	—	2025	→
Investigating the role of the <i>Listeria monocytogenes</i> noncoding RNA Rli47 during the response to environmental stressors.	Tibbs-Cortes BW et al.	—	2025	→
IPScan: Detecting novel intronic PolyAdenylation events with RNA-seq data.	Fahmi NA et al.	—	2025	→
<i>Pseudomonas rossensis</i> sp. nov., a novel psychrotolerant species produces antimicrobial agents targeting resistant clinical isolates of <i>Pseudomonas aeruginosa</i>.	Snopková K et al.	—	2025	→
Isolation and Characterization of the Adamantinomatous Craniopharyngioma Primary Cells with Cancer-Associated Fibroblast Features.	Chen D et al.	—	2025	→
IWS1 positions downstream DNA to globally stimulate Pol II elongation.	Zheenbekova A et al.	—	2025	→
Jumbo phage killer immune system targets early infection of nucleus-forming phages.	Yuping L et al.	—	2025	→
Kalamari: a representative set of genomes of public health concern.	Katz LS et al.	—	2025	→
Laminarin stimulates single cell rates of sulfate reduction whereas oxygen inhibits transcriptomic activity in coastal marine sediment.	Lindsay MR et al.	—	2025	→
Large-scale predictions of alternative protein conformations by AlphaFold2-based sequence association.	Lee M et al.	—	2025	→
Large-scale transcriptome mining enables macrocyclic diversification and improved bioactivity of the stephanotic acid scaffold.	Wang X et al.	—	2025	→
LINE-1 retrotransposition in a mouse TDP-43 model of neurodegeneration marks motor cortex neurons for cell-intrinsic and cell non-autonomous programmed cell death.	Korada S et al.	—	2025	→
Long-read sequencing of 945 Han individuals identifies structural variants associated with phenotypic diversity and disease susceptibility.	Gong J et al.	—	2025	→
Long-read sequencing reveals genomic and epigenomic variation in the dark genome of human Alzheimer's disease.	Ramirez P et al.	—	2025	→
Loss of multiple micro-RNAs uncovers multi-level restructuring of gene regulation in rodents.	Langschied F et al.	—	2025	→
LoVis4u: a locus visualization tool for comparative genomics and coverage profiles.	Egorov AA et al.	—	2025	→
<i>Bacillus</i>-Based Biocontrol Agents Mediate Pathogen Killing by Biodegradable Antimicrobials from Macrolactin Family.	Guglya EB et al.	—	2025	→
<i>Citrobacter braakii</i> Isolated from Salami and Soft Cheese: An Emerging Food Safety Hazard?	Pasquali F et al.	—	2025	→
<i>GALNT14</i> Genetic Variants Harbor Differential Prognostic Values Linking to Distinct Macrophage Cell Types in Hepatocellular Carcinoma.	Chu YD et al.	—	2025	→
<i>Serratia marcescens</i> Isolates from Bovine Mastitic Milk: Antimicrobial Resistance and Virulence Features.	Moreira G et al.	—	2025	→
<i>SLC4A11</i> Revisited: Isoforms, Expression, Functions, and Unresolved Questions.	Kovaleva PA et al.	—	2025	→
Machine Learning-Guided Identification of PET Hydrolases from Natural Diversity.	Norton-Baker B et al.	—	2025	→
Major waves of H2A.Z incorporation during mouse oogenesis and preimplantation embryo development.	Fosslie M et al.	—	2025	→
MANUDB: database and application to retrieve and visualize mammalian NUMTs.	Biró B et al.	—	2025	→
Mapping MAVE data for use in human genomics applications.	Arbesfeld JA et al.	—	2025	→
Mapping the ultrastructural topology of the corynebacterial cell surface.	Isbilir B et al.	—	2025	→
Marine Community Metabolomes in the Eastern Tropical North Pacific Oxygen Deficient Zone Reveal Glycine Betaine as a Metabolic Link Between Prochlorococcus and SAR11.	Kellogg NA et al.	—	2025	→
Maternal plasma cell-free DNA nucleosome footprints can reveal changes in gene expression profiles during pregnancy and pre-eclampsia.	Li K et al.	—	2025	→
Measuring genetic diversity of Texas bluegrass and allele sharing with Kentucky bluegrass interspecific hybrids using genome-wide markers.	Boerman NA et al.	—	2025	→
Metagenome-assembled-genomes recovered from the Arctic drift expedition MOSAiC.	Boulton W et al.	—	2025	→
Metagenomic analysis reveals methanogenic and other archaeal genes in the digestive tract of invasive Japanese beetle larvae and associated soil.	Avila-Arias H et al.	—	2025	→
Metagenomic and metatranscriptomic exploration of Avicennia germinans L.: Endophytic microbiome of leaves and roots.	Lemos-Lucumi CA et al.	—	2025	→
Metagenomic estimation of absolute bacterial biomass in the mammalian gut through host-derived read normalization.	Tang G et al.	—	2025	→
Metagenomic Insight into Cecal Microbiota Shifts in Broiler Chicks Following <i>Eimeria</i> spp. Vaccination.	Karadedos DM et al.	—	2025	→
Metagenomic insights into host-specific gastroenteritis bacteria in forest rodents of Sarawak, Borneo: implications for one health surveillance of rodent-borne pathogens.	Azmi MAI et al.	—	2025	→
Metagenomic Investigation of Intestinal Microbiota of Insectivorous Synanthropic Bats: Densoviruses, Antibiotic Resistance Genes, and Functional Profiling of Gut Microbial Communities.	Popov IV et al.	—	2025	→
Metaproteomics Beyond Databases: Addressing the Challenges and Potentials of De Novo Sequencing.	Van Den Bossche T et al.	—	2025	→
Metatranscriptomes of activated sludge microbiomes from saline wastewater treatment plant.	Mahajna A et al.	—	2025	→
Microbial community shifts during salt mitigation treatments of historic buildings using mineral poultices: a long-term monitoring of salt and associated biofilms.	Tichy J et al.	—	2025	→
Microbial Cooperative Molecular Strategies Enabling 1,2-Dichloroethane Detoxification in Low pH Aquifers.	Zhao S et al.	—	2025	→
MicroRNA gene dynamics in immune cell subpopulations during aging and atherosclerosis disease development at single-cell resolution.	de Sande AH et al.	—	2025	→
MicroRNAs and rs1803274 SNP-based BuChe downregulation are associated with metabolic syndrome through ghrelin hydrolysis and expression quantitative trait loci regulation in PD patients.	Chevalier G et al.	—	2025	→
miR398 targets a Cu<sup>2+</sup>-containing Selenium Binding Protein (SBP) in rice and the phylogenetic analysis of the miR398-SBP module in plants.	Payne D et al.	—	2025	→
miRTarBase 2025: updates to the collection of experimentally validated microRNA-target interactions.	Cui S et al.	—	2025	→
Missense variants in FRS3 affect body mass index in populations of diverse ancestries.	Jonsdottir AB et al.	—	2025	→
MitoCOMON: whole mitochondrial DNA sequencing by primer design and long overlapping amplicon assembly.	Furuta Y et al.	—	2025	→
Mobilome-mediated transcriptional activation of biosynthetic gene clusters and its impact on strain competitiveness in food fermentation microbiomes.	Xu L et al.	—	2025	→
Modelling the Full-Length Inactive PKC-δ Structure to Explore Regulatory Accessibility and Selective Targeting Opportunities.	Khader R et al.	—	2025	→
MoG+3.0: expanded structural variant visualization and integration of genomic data from five newly analyzed mouse strains.	Takada T et al.	—	2025	→
Molecular and Functional Convergences Associated with Complex Multicellularity in Eukarya.	Pereira Lobo F et al.	—	2025	→
Molecular and genomic insights into multidrug-resistant (MDR) and extensively drug-resistant (XDR) Pseudomonas aeruginosa causing burn wound infections in Bangladesh.	Mondol SM et al.	—	2025	→
Molecular Assessment of Genes Linked to Honeybee Health Fed with Different Diets in Nuclear Colonies.	Diedrick WA et al.	—	2025	→
Molecular evolution of the Wood-Ljungdahl pathway and the reductive glycine pathway in <i>Desulfobacterota</i>.	Wakashima T et al.	—	2025	→
Molecular insights into region-specific sexual dichromatism: Comparative transcriptome analysis of red cheek pigmentation in zebra finches.	Lin GW et al.	—	2025	→
Multi-ancestry whole genome sequencing analysis of lean body mass.	Zhang X et al.	—	2025	→
Multi-omics profiling reveals associations between gut microbiota and olfactory gene expression in mosquitoes.	Gao H et al.	—	2025	→
MultiStageSearch: An Iterative Workflow for Unbiased Taxonomic Analysis of Pathogens Using Proteogenomics.	Pipart J et al.	—	2025	→
Mutations of <i>MRGPRX2,</i> drug sensitivity, and genetic markers related to disease.	Ratnayake SH et al.	—	2025	→
Nanoplastic exposure affects the intestinal microbiota of adult Drosophila flies.	Rocabert A et al.	—	2025	→
Nanopore full length 16S rRNA gene sequencing increases species resolution in bacterial biomarker discovery.	Aja-Macaya P et al.	—	2025	→
Nanopore Long-Read Sequencing as a First-Tier Diagnostic Test to Detect Repeat Expansions in Neurological Disorders.	de Boer EN et al.	—	2025	→
Natural language processing of gene descriptions for overrepresentation analysis with GeneTEA.	Boyle IA et al.	—	2025	→
NCBI RefSeq: reference sequence standards through 25 years of curation and annotation.	Goldfarb T et al.	—	2025	→
Neanderthal and Denisovan Glutamate Dehydrogenase 2 Evolution and Clinical Significance.	Aleshina YA et al.	—	2025	→
Neonatal gut microbiota and risk of developing food sensitization and allergy.	Shibata R et al.	—	2025	→
Nested PCR to optimize <i>rpoB</i> metabarcoding for low-concentration and host-associated bacterial DNA.	Leclerc L et al.	—	2025	→
NetStart 2.0: prediction of eukaryotic translation initiation sites using a protein language model.	Nielsen LS et al.	—	2025	→
Notable challenges posed by long-read sequencing for the study of transcriptional diversity and genome annotation.	Monzó C et al.	—	2025	→
Not for nothing, microplastics can (potentially) reduce the risk of mosquito-to-human transmission of arboviruses.	Li JH et al.	—	2025	→
Novel biomarker identification for oral squamous cell carcinoma development in nonsmoker, nondrinker, and nonchewer patients using third-generation sequencing of oral microbiome.	Lyu WN et al.	—	2025	→
Novel drug targets for monkeypox: From viral to host proteins.	Zhu Z et al.	—	2025	→
Novel metal sites revealed by spectroscopic and structural characterization of the ferric uptake regulator from <i>Acidithiobacillus ferrooxidans</i>.	Argandoña Y et al.	—	2025	→
Novel Viral Sequences in a Patient with Cryptogenic Liver Cirrhosis Revealed by Serum Virome Sequencing.	Zhang X et al.	—	2025	→
Oarfish: enhanced probabilistic modeling leads to improved accuracy in long read transcriptome quantification.	Zare Jousheghani Z et al.	—	2025	→
Obesity promotes urinary tract infection by disrupting bladder focal adhesion kinase signaling.	Schwartz L et al.	—	2025	→
Occurrence of Multiple <i>stx1</i> Genes and Rare Genomic Variation in <i>stx1</i> Shiga Toxin-Producing <i>Escherichia coli</i>.	Projahn M et al.	—	2025	→
Opposite sex housing enhances reproductive function and induces transcriptional changes in the preoptic area of GnRH-deficient mice.	Akonom TN et al.	—	2025	→
Optimizing metagenomic next-generation sequencing in CNS infections: a diagnostic model based on CSF parameters.	Cao XG et al.	—	2025	→
Organismal complexity strongly correlates with the number of protein families and domains.	Alvarez-Ponce D et al.	—	2025	→
oriTDB: a database of the origin-of-transfer regions of bacterial mobile genetic elements.	Liu G et al.	—	2025	→
OrthoDB and BUSCO update: annotation of orthologs with wider sampling of genomes.	Tegenfeldt F et al.	—	2025	→
Overcoming challenges in metagenomic AMR surveillance with nanopore sequencing: a case study on fluoroquinolone resistance.	Bloemen B et al.	—	2025	→
Over time analysis of the codon usage of SARS-CoV-2 and its variants.	Davidson A et al.	—	2025	→
Pan-Cancer Upregulation of the <i>FOXM1</i> Transcription Factor.	Pozzobon D et al.	—	2025	→
Pangenome-Guided Reverse Vaccinology and Immunoinformatics Approach for Rational Design of a Multi-Epitope Subunit Vaccine Candidate Against the Multidrug-Resistant Pathogen <i>Chromobacterium violaceum</i>: A Computational Immunopharmacology Perspective.	Allemailem KS	—	2025	→
Parallel gene expansions drive rapid dietary adaptation in herbivorous woodrats.	Klure DM et al.	—	2025	→
ParaRef: a decontaminated reference database for parasite detection in ancient and modern metagenomic datasets.	Niemann J et al.	—	2025	→
Pathogenic variation underlying rare diseases in an Arab population: Implications for screening programs.	Jain R et al.	—	2025	→
Patterns of autoantibody expression in multiple sclerosis identified through development of an autoantigen discovery technology.	DiCillo EB et al.	—	2025	→
PIEZO1 mechanical insensitivity in generalized lymphatic dysplasia with the potential for pharmacological rescue.	Ludlow MJ et al.	—	2025	→
PLAMseq enables the proteo-genomic characterization of chromatin-associated proteins and protein interactions in a single workflow.	González-Vinceiro L et al.	—	2025	→
Plasmid Genomic Dynamics and One Health: Drivers of Antibiotic Resistance and Pathogenicity.	Domingues CPF et al.	—	2025	→
PlasmidScope: a comprehensive plasmid database with rich annotations and online analytical tools.	Li Y et al.	—	2025	→
Polypeptides synthesized by common bacteria in the human gut improve rodent metabolism.	Fan Y et al.	—	2025	→
Positive Selection Shapes Breast Cancer Tumor Suppressor Genes: Unveiling Insights into BRCA1, BRCA2, and MDC1 Stability.	Fadel YM et al.	—	2025	→
Predicting gene expression from histone marks using chromatin deep learning models depends on histone mark function, regulatory distance and cellular states.	Murphy AE et al.	—	2025	→
Prediction of gene expression using histone modification patterns extracted by Particle Swarm Optimization.	Paul NB et al.	—	2025	→
Pre-exposure to stress reduces loss of community and genetic diversity following severe environmental disturbance.	Xu CCY et al.	—	2025	→
Preterm Birth in African American Women: A Multi-Omic Pilot Study in Early Pregnancy.	Nowak AL et al.	—	2025	→
Prevalence and genomic characteristics of becAB-carrying Clostridium perfringens strains.	Fang M et al.	—	2025	→
Profiling of RBM20-Regulated CaMKIIδ Splice Variants Across the Heart, Skeletal Muscle, and Olfactory Bulbs.	Maeda Y et al.	—	2025	→
Profiling of vaginal microbial communities in Chilean women via self-sampling and nanopore sequencing.	Oliva-Arancibia B et al.	—	2025	→
Prophage-DB: a comprehensive database to explore diversity, distribution, and ecology of prophages.	Dieppa-Colón E et al.	—	2025	→
Proposal of <i>Bacillus altaicus</i> sp. nov. Isolated from Soil in the Altai Region, Russia.	Shikov AE et al.	—	2025	→
ProTaxoVis-protein taxonomic visualisation of presence.	Hsieh YC et al.	—	2025	→
Protein-Protein Interactions in Papillary and Nonpapillary Urothelial Carcinoma Architectures: Comparative Study.	Chou C et al.	—	2025	→
Protein structure prediction via deep learning: an in-depth review.	Meng Y et al.	—	2025	→
Proteogenomic annotation of T6SS components identified in <i>Bacteroides fragilis</i> secretome.	Zakharzhevskaya NB et al.	—	2025	→
Proteogenomic characterization unveils biomarkers associated with chemoresistance in muscle-invasive bladder cancer.	Holt MV et al.	—	2025	→
PSAURON: a tool for assessing protein annotation across a broad range of species.	Sommer MJ et al.	—	2025	→
Pseudocitrobacter cyperus, a novel bacterial species recovered from Cyperus alternifolius in Egypt.	Hamed SM et al.	—	2025	→
Psychrotolerant Erwinia psychrophila sp. nov. and Erwinia magellanica sp. nov. Isolated from Penguin Faeces.	Sedláček I et al.	—	2025	→
pubCounteR: an R package for interrogating published literature for experimentally-derived gene lists within a user-defined biological context.	Leer M et al.	—	2025	→
Pulsatile basal gene expression as a fitness determinant in bacteria.	Jain K et al.	—	2025	→
qPrimerDB 2.0: an updated comprehensive gene-specific qPCR primer database for 1172 organisms.	Li X et al.	—	2025	→
Quadrupia provides a comprehensive catalog of G-quadruplexes across genomes from the tree of life.	Chantzi N et al.	—	2025	→
Quantifying annotation-driven bias in alternative splicing from EGAP metadata.	de la Fuente R et al.	—	2025	→
Quantifying the Evolutionary Dynamics of Structure and Content in Closely Related E. coli Genomes.	Molari M et al.	—	2025	→
Quantitative prediction of disinfectant tolerance in Listeria monocytogenes using whole genome sequencing and machine learning.	Gmeiner A et al.	—	2025	→
Quick Analysis of Sedimentary Ancient DNA Using quicksand.	Szymanski M et al.	—	2025	→
Rapid detection and capture of clinical Escherichia coli strains mediated by OmpA-targeting nanobodies.	Sorgenfrei M et al.	—	2025	→
Rapid evolution of recombination landscapes during the divergence of cichlid ecotypes in Lake Masoko.	Talbi M et al.	—	2025	→
ReadSeeker: A DNABERT based de-novo read-level gene predictor.	Wulf B et al.	—	2025	→
Recent advances in investigation of circRNA/lncRNA-miRNA-mRNA networks through RNA sequencing data analysis.	Gao Y et al.	—	2025	→
Recovery of 1,773 microbial genomes and 2,060 viral genomes from the Mars-analog Qaidam Basin desert.	Liu L et al.	—	2025	→
Recurrent breakpoints in the BRD4 locus reduce toxicity associated with gene amplification.	Wala J et al.	—	2025	→
Redefining the role of the EryM acetyltransferase in natural product biosynthetic pathways.	Li Y et al.	—	2025	→
Reference genome of the Gophersnake, Pituophis catenifer (Serpentes: Colubridae).	Grismer JL et al.	—	2025	→
Regional autozygosity association with albumin-to-creatinine ratio reveals a novel FTO region in an Indigenous Australian population.	Arunachalam V et al.	—	2025	→
Repurposing Drugs for Infectious Diseases by Graph Convolutional Network with Sensitivity-Based Graph Reduction.	Yue R et al.	—	2025	→
Revealing the Existence of Diverse Strategies for Phosphorus Solubilization and Acquisition in Plant-Growth Promoting <i>Streptomyces misionensis</i> SwB1.	Chen Y et al.	—	2025	→
Rewriting regulatory DNA to dissect and reprogram gene expression.	Martyn GE et al.	—	2025	→
Rhizosphere microbiome influence on tomato growth under low-nutrient settings.	Mejia G et al.	—	2025	→
RIBOSS detects novel translational events by combining long- and short-read transcriptome and translatome profiling.	Lim CS et al.	—	2025	→
Risk Prediction of RNA Off-Targets of CRISPR Base Editors in Tissue-Specific Transcriptomes Using Language Models.	Nakamae K et al.	—	2025	→
RNA G‑Quadruplex Reprogramming with Guanine-Rich Antisense Oligonucleotides Inhibits Monoamine Oxidase B's Translation.	Turcotte MA et al.	—	2025	→
RNA Polymerase I Dysfunction Underlying Craniofacial Syndromes: Integrated Genetic Analysis Reveals Parallels to 22q11.2 Deletion Syndrome.	Silvey S et al.	—	2025	→
RNA sequence analysis landscape: A comprehensive review of task types, databases, datasets, word embedding methods, and language models.	Asim MN et al.	—	2025	→
RNF122 targets STING for ubiquitination at residues K95, K117, and K155 to regulate antiviral responses in a teleost fish.	Qin XW et al.	—	2025	→
RSYD-BASIC: a bioinformatic pipeline for routine sequence analysis and data processing of bacterial isolates for clinical microbiology.	Steinke K et al.	—	2025	→
SAI: A Python Package for Statistics for Adaptive Introgression.	Huang X et al.	—	2025	→
SARCP, a Clinical Next-Generation Sequencing Assay for the Detection of Gene Fusions in Sarcomas: A Description of the First 652 Cases.	Atiq MA et al.	—	2025	→
SEE: A Method for Predicting the Dynamics of Chromatin Conformation Based on Single-Cell Gene Expression.	Li M et al.	—	2025	→
Selection Maintains Photosynthesis in a Symbiotic Cyanobacterium Despite Redundancy With its Fern Host.	Friar L et al.	—	2025	→
Sequence Design for RNA-RNA Interactions.	Waldl M et al.	—	2025	→
Sewers to Seas: exploring pathogens and antimicrobial resistance on microplastics from hospital wastewater to marine environments.	Stevenson EM et al.	—	2025	→
Sexual dimorphism and susceptibility to Alzheimer's disease: Understanding genetic involvement and other risk factors.	Ajagbe AO et al.	—	2025	→
Short Inverted Repeats as Mutational Hotspots and Putative Drivers of Genome Instability in Osteosarcoma.	Li M et al.	—	2025	→
Silent mutations in coding regions of Hepatitis C virus affect patterns of HCV RNA structures and attenuate viral replication and pathogenesis.	Dabour R et al.	—	2025	→
SKiM: accurately classifying metagenomic ONT reads in limited memory.	Schneggenburger T et al.	—	2025	→
Small Bugs, Big Data: Metagenomics for Arthropod Biodiversity Monitoring.	López Clinton S et al.	—	2025	→
Small molecule inhibition of SUMOylation increases expression from AAV vectors both during and after initial transduction in mice.	Seleme MC et al.	—	2025	→
Sm-site containing mRNAs can accept Sm-rings and are downregulated in Spinal Muscular Atrophy.	Blatnik AJ et al.	—	2025	→
Snapshot Genomic Surveillance Reveals Insights into Antimicrobial Resistance and Lineage Diversity of Uropathogens in Older Adults in Queensland.	Permana B et al.	—	2025	→
SNP-RFLP Markers for the Study of <i>Arabidopsis lyrata</i>.	Liu M et al.	—	2025	→
Spatial entropy drives the maintenance and dissemination of transferable plasmids.	Xue W et al.	—	2025	→
Species-resolved profiling of antibiotic resistance genes in complex metagenomes through long-read overlapping with Argo.	Chen X et al.	—	2025	→
Stable Hypermutators Revealed by the Genomic Landscape of Genes Involved in Genome Stability Among Yeast Species.	Gonçalves C et al.	—	2025	→
Staphylococcus hominis as a source of antimicrobial peptides: identification of a new peptide with potential antimicrobial properties using in silico approach.	Chemao-Elfihri MW et al.	—	2025	→
Staple oligomers induce a stable RNA G-quadruplex structure for protein translation inhibition in therapeutics.	Katsuda Y et al.	—	2025	→
StreptomeDB 4.0: a comprehensive database of streptomycetes natural products enriched with protein interactions and interactive spectral visualization.	Feng Y et al.	—	2025	→
Striking mycotoxin tolerance and zearalenone elimination capacity of the decaying wood associated yeast Sugiyamaella novakii (Trichomonascaceae).	Acs-Szabo L et al.	—	2025	→
Structural analysis of the lncRNA SChLAP1 reveals protein binding interfaces and a conformationally heterogenous retroviral insertion.	Falese JP et al.	—	2025	→
Structural and functional insights into UDP-N-acetylglucosamine-enolpyruvate reductase (MurB) from Brucella ovis.	Minjárez-Sáenz M et al.	—	2025	→
Structural basis for transcription activation through cooperative recruitment of MntR.	Shi H et al.	—	2025	→
stSNV: a comprehensive resource of SNVs in spatial transcriptome.	Yang C et al.	—	2025	→
Subtractive proteomics and molecular docking identify therapeutic targets and drug candidates in drug resistant Klebsiella Michiganensis THO-011.	Alanzi AR et al.	—	2025	→
Subtractive proteomics unravel the potency of D-alanine-D-alanine ligase as the drug target for Burkholderia pseudomallei.	Rahman S et al.	—	2025	→
Sugar-sweetened beverage intake, gut microbiota, circulating metabolites, and diabetes risk in Hispanic Community Health Study/Study of Latinos.	Zhang Y et al.	—	2025	→
Survival and spread of engineered <i>Mycobacterium smegmatis</i> and associated mycobacteriophage in soil microcosms.	Fleeharty MS et al.	—	2025	→
Synergistic action of specialized metabolites from divergent biosynthesis in the human oral microbiome.	Loop Yao M et al.	—	2025	→
Systems biology of Haemonchus contortus - Advancing biotechnology for parasitic nematode control.	Zheng Y et al.	—	2025	→
Targeted next-generation sequencing - a promising approach in the diagnosis of Mycobacterium tuberculosis and drug resistance.	Wu X et al.	—	2025	→
Targeted protein evolution in the gut microbiome by diversity-generating retroelements.	Macadangdang BR et al.	—	2025	→
TaxaGO: a novel, phylogenetically informed gene ontology enrichment analysis tool.	Bochalis E et al.	—	2025	→
Taxonomic and Functional Features of Surface to Deep-Sea Prokaryotic Communities in the Eastern North Pacific Ocean.	De Corte D et al.	—	2025	→
Temporal trends of antibiotic resistance in culturable bacteria reveal the role of potential pathogens as pioneering carriers and resistance accumulators.	Zhao B et al.	—	2025	→
Terminal differentiation and persistence of effector regulatory T cells essential for preventing intestinal inflammation.	Dikiy S et al.	—	2025	→
The application of omics tools in food mycology.	Niessen L et al.	—	2025	→
The assembly and annotation of two teinturier grapevine varieties, Dakapo and Rubired.	Ritter EJ et al.	—	2025	→
The cell-type-specific genetic architecture of chronic pain in brain and dorsal root ganglia.	Toikumo S et al.	—	2025	→
The early evolution of the glycolytic pathway from autotrophic origins to glycogen and back.	Modjewski LD et al.	—	2025	→
The Earth BioGenome Project Phase II: illuminating the eukaryotic tree of life.	Blaxter M et al.	—	2025	→
The evolution of dbSNP: 25 years of impact in genomic research.	Phan L et al.	—	2025	→
The fecal resistome of beef cattle from conventional grain-fed and grass-fed systems in the Western United States.	Feng Y et al.	—	2025	→
The Gene Encoding the RCC1 (Regulator of Chromosome Condensation 1) Protein in <i>Drosophila melanogaster</i> and <i>Homo sapiens</i>.	Turtapkina VA et al.	—	2025	→
The genetic context of blaIMP varies among bacterial families from One Health sources.	Grooters SV et al.	—	2025	→
The genome sequence of the Barred Hook-tip, <i>Watsonalla cultraria</i> (Fabricius, 1775) (Lepidoptera: Drepanidae).	Crowley LM et al.	—	2025	→
The gut-liver axis plays a limited role in mediating the liver's heat susceptibility of Chinese giant salamander.	Zhai R et al.	—	2025	→
The Gut Microbiome of the Asiatic Toad (<i>Bufo gargarizans</i>) Reflects Environmental Changes and Human Activities.	Kang X et al.	—	2025	→
The Hidden Viral Network: How Viruses Shape Microbial Adaptability and Biogeochemical Cycling in the Polyextreme Mars-Analog Qaidam Basin Desert.	Liu L et al.	—	2025	→
The horse gut bacteriome and anaerobic mycobiome are influenced by seasonal forages and small intestinal starch digestibility.	Wunderlich G et al.	—	2025	→
The Human Archaeome: Commensals, Opportunists, or Emerging Pathogens?	Ruden DM	—	2025	→
The <i>Campylobacter jejuni</i> BumS sensor phosphatase detects the branched short-chain fatty acids isobutyrate and isovalerate as direct cues for signal transduction.	Ruiz N et al.	—	2025	→
The impact of telomere-to-telomere genome assembly in the plant pan-genomics era.	Aoyagi Blue Y et al.	—	2025	→
The interaction of <i>Serratia</i> bacteria and harmonine in harlequin ladybird confers an interspecies competitive edge.	Zhang C et al.	—	2025	→
The landscape of Helicobacter pylori-mediated DNA breaks links bacterial genotoxicity to its oncogenic potential.	Sibony-Benyamini H et al.	—	2025	→
The microbiologist's guide to metaproteomics.	Van Den Bossche T et al.	—	2025	→
The molecular basis for acetylhistidine synthesis by HisAT/NAT16.	Myllykoski M et al.	—	2025	→
The Neglected Role of Heterotrophic Protists in Engineered Water Systems.	Song H et al.	—	2025	→
The Nextflow nf-core/metatdenovo pipeline for reproducible annotation of metatranscriptomes, and more.	Di Leo D et al.	—	2025	→
The pitfalls of rDNA-based AMF identification: a comparative analysis of rDNA and protein-coding genes.	Stefani F et al.	—	2025	→
The PLSDB 2025 update: enhanced annotations and improved functionality for comprehensive plasmid research.	Molano LG et al.	—	2025	→
The potential of wastewater monitoring as a novel surveillance tool for early warning of <i>Bordetella pertussis</i> outbreaks.	Fu S et al.	—	2025	→
The PRC2-associated factor EPOP is required for Hox gene regulation during axial development in mice.	Mocavini I et al.	—	2025	→
The PRMT5-splicing axis is a critical oncogenic vulnerability that regulates detained intron splicing.	Fowler CE et al.	—	2025	→
The promises and pitfalls of automated variant interpretation: a comprehensive review.	Costa M et al.	—	2025	→
The protein kinase C modulator bryostatin-1 therapeutically targets microglia to attenuate neuroinflammation and promote remyelination.	Gharibani P et al.	—	2025	→
Therapeutic antisense oligonucleotide mitigates retinal dysfunction in a pig model of CLN3 Batten disease.	Stratton MP et al.	—	2025	→
The Relevance of the Accurate Annotation of Micro and Long Non-Coding RNA Interactions for the Development of Therapies.	Panni S	—	2025	→
The repertoire of short tandem repeats across the tree of life.	Chantzi N et al.	—	2025	→
Thermal Annealing Enhances Piezoelectricity and Regenerative Potential of PVDF-TrFE Nanofiber Scaffolds.	Krutko M et al.	—	2025	→
Thermostable Bacterial Esterases From Lipase Family 1.5 Degrade Compostable Polyesters PBAT and PBSA.	Ahmed FH et al.	—	2025	→
The RodentGPOmics Atlas: a comprehensive database of rodent biology for genomes and pathogens.	Jiang Z et al.	—	2025	→
The role and application of bioinformatics techniques and tools in drug discovery.	Zhang S et al.	—	2025	→
The role of super-enhancer-driven lncRNAs in cancer.	Su YY et al.	—	2025	→
The Spread of Antibiotic Resistance Is Driven by Plasmids Among the Fastest Evolving and of Broadest Host Range.	Coluzzi C et al.	—	2025	→
The telomere-to-telomere genome of flowering cherry (Prunus campanulata) reveals genomic evolution of the subgenus Cerasus.	Jiang D et al.	—	2025	→
The UCSC Genome Browser database: 2025 update.	Perez G et al.	—	2025	→
The unusual suspect: A novel role for intermediate filament proteins in mitochondrial morphology.	Hemel IMGM et al.	—	2025	→
The Updated Genome Warehouse: Enhancing Data Value, Security, and Usability to Address Data Expansion.	Ma Y et al.	—	2025	→
The use of metagenomics to enhance diagnosis of encephalitis.	Buddle S et al.	—	2025	→
The Viral AlphaFold Database of monomers and homodimers reveals conserved protein folds in viruses of bacteria, archaea, and eukaryotes.	Odai R et al.	—	2025	→
The Zebrafish Sperm Proteome.	Cohen-Krais J et al.	—	2025	→
Toward streamline variant classification: discrepancies in variant nomenclature and syntax for ClinVar pathogenic variants across annotation tools.	Chen YA et al.	—	2025	→
Toward the Characterization of the Human Core Ocular Surface Microbiome.	Morandi SC et al.	—	2025	→
Transcriptional landscape of the cell cycle in a model thermoacidophilic archaeon reveals similarities to eukaryotes.	Gomez-Raya-Vilanova MV et al.	—	2025	→
Transcript isoform diversity defines molecular subtypes and prognosis in acute myeloid leukemia through long-read sequencing.	Shi X et al.	—	2025	→
Transcriptome sequencing reveals the evolutionary histories and gene expression evolution in two related Pagurus species.	Sultana Z et al.	—	2025	→
Transcriptomic and protein-protein interaction network analyses of the molecular mechanisms underlying the mycorrhizal interaction in <i>Cypripedium macranthos</i> var. <i>rebunense</i>.	Jin C et al.	—	2025	→
Transcriptomic characterization of postnatal muscle maturation.	Simon A et al.	—	2025	→
Transcriptomic profiling of wild Atlantic salmon affected with red skin disease (RSD).	Cano I et al.	—	2025	→
Transcriptomics in the era of long-read sequencing.	Monzó C et al.	—	2025	→
Trio-Based Whole-Genome Sequencing for Critically Ill Pediatric Patients in Korea.	Lee S et al.	—	2025	→
Two coacting shadow enhancers regulate twin of eyeless expression during early Drosophila development.	Dresch JM et al.	—	2025	→
Two new psychrotolerant Massilia species inhibit plant pathogens Clavibacter and Curtobacterium.	Sedláček I et al.	—	2025	→
Two novel trimethoprim resistance genes, <i>dfra50</i> and <i>dfra51</i>, identified in phage-plasmids.	Wang K et al.	—	2025	→
Uncovering the isoform-resolution kinetic landscape of nonsense-mediated mRNA decay with EZbakR	Mabin JW et al.	—	2025	—
Uncovering the Role of DNA Repair Impairment in UVA-Induced Mutagenesis in Human Xeroderma Pigmentosum Variant Cells.	Corradi C et al.	—	2025	→
Uncovering tissue-specific endophytic microbiota composition and activity in <i>Rhizophora mangle</i> L.: a metagenomic and metatranscriptomic approach.	Cárdenas-Hernández V et al.	—	2025	→
Unexplored diversity and potential functions of extra-chromosomal elements.	Liu H et al.	—	2025	→
Unlocking microbial potential: advances in omics and bioinformatics for aromatic hydrocarbon degradation.	Vidal-Silva IM et al.	—	2025	→
Unraveling the ecological success of <i>Iodidimonas</i> in a bioreactor treating oil and gas produced water.	Acharya SM et al.	—	2025	→
Unraveling the Roles of Epigenetic Regulators During the Embryonic Development of <i>Rhipicephalus microplus</i>.	Amarante AM et al.	—	2025	→
Unravelling mutation patterns in Extended-Spectrum β-Lactamases for precision drug design against AMR in Enterobacteriaceae.	Bano N et al.	—	2025	→
Unravelling the Persistence of the Rare Serovar <i>Salmonella</i> Mikawasima in a Hospital Setting: A Whole-Genome Sequencing Study.	Ferencak I et al.	—	2025	→
Unravelling viral ecology and evolution over 20 years in a freshwater lake.	Zhou Z et al.	—	2025	→
Unveiling <i>Wolbachia</i> transcriptomic signature in the arboviral vector <i>Aedes aegypti</i>.	Mejías S et al.	—	2025	→
Uracil-DNA Glycosylase from <i>Beta vulgaris</i>: Properties and Response to Abiotic Stress.	Petrova DV et al.	—	2025	→
Use <i>ATCCfinder</i> to identify commercially available American Type Culture Collection strains based on sequence queries.	Koehler SI et al.	—	2025	→
Use of the CHM13-T2T genome improves metagenomic analysis by minimizing host DNA contamination.	Liu D et al.	—	2025	→
UTR-Insight: integrating deep learning for efficient 5' UTR discovery and design.	Pan S et al.	—	2025	→
UVA-light-induced mutagenesis in the exome of human nucleotide excision repair-deficient cells.	Quintero-Ruiz N et al.	—	2025	→
Variant calling from RNA-Seq data reveals allele-specific differential expression of pathogenic cancer variants.	Bollas A et al.	—	2025	→
Virus targeting as a dominant driver of interfacial evolution in the structurally resolved human-virus protein-protein interaction network.	Su WC et al.	—	2025	→
Whole-Exome Sequencing-Based Linkage Analysis of Multiple Myeloma (MM) and Monoclonal Gammopathy of Undetermined Significance (MGUS) Pedigrees.	Clay-Gilmour AI et al.	—	2025	→
Whole genome sequence data of <i>Trichoderma yunnanense</i> strain TM10, a plant growth-promoting fungus and biocontrol agent.	Prismantoro D et al.	—	2025	→
Whole-Genome Sequencing of 54 Dengchuan Cattle (Bos taurus) from Southwest China.	Feng KJ et al.	—	2025	→
Whole transcriptomic analysis reveals the lncRNA-miRNA-mRNA regulatory mechanism underlying the heat-hardening formation in Mytilus coruscus.	Wang H et al.	—	2025	→
Why AGG is associated with high transgene output: passenger effects and their implications for transgene design.	Daniels KG et al.	—	2025	→
Wide-ranging organic nitrogen diets of freshwater picocyanobacteria.	Druce E et al.	—	2025	→
βcatenin-1 localization and transcriptomic profiling provide insights into the early development of planarians.	Coronel-Córdoba P et al.	—	2025	→
β-Lactamase diversity in <i>Acinetobacter baumannii</i>.	Mack AR et al.	—	2025	→
β-Lactamase diversity in <i>Pseudomonas aeruginosa</i>.	Mack AR et al.	—	2025	→
γBMGC: A Comprehensive and Accurate Database for Screening TMAO-Associated Cardiovascular Diseases.	Yang G et al.	—	2025	→
Aberrant Mitochondrial tRNA Genes Appear Frequently in Animal Evolution.	Ozerova I et al.	—	2024	→
A catalog of small proteins from the global microbiome.	Duan Y et al.	—	2024	→
A chromosome-level genome assembly of a model conifer plant, the Japanese cedar, Cryptomeria japonica D. Don.	Fujino T et al.	—	2024	→
Adaptive Evolution Signatures in <i>Prochlorococcus</i>: Open Reading Frame (ORF)eome Resources and Insights from Comparative Genomics.	Daakour S et al.	—	2024	→
Advancing microbial diagnostics: a universal phylogeny guided computational algorithm to find unique sequences for precise microorganism detection.	Sharma GK et al.	—	2024	→
A genomic analysis reveals the diversity of cellulosome displaying bacteria.	Minor CM et al.	—	2024	→
A Haplotype-resolved, Chromosome-scale Genome for Malus domestica Borkh. 'WA 38'.	Zhang H et al.	—	2024	→
Allele and genotype frequencies of variants in P450 cytochromes, transports, and DNA repair enzymes in the Dominican Republic population.	Pérez-Duval E et al.	—	2024	→
Allele-specific transcription factor binding across human brain regions offers mechanistic insight into eQTLs.	Anderson AG et al.	—	2024	→
Alternative splicing expands the antiviral IFITM repertoire in Chinese rufous horseshoe bats.	Mak NSC et al.	—	2024	→
A meta-analysis and polygenic score study identifies novel genetic markers for waist-hip ratio in African populations.	Zhong M et al.	—	2024	→
Anaerobic <i>Faecalicatena</i> spp. degrade sulfoquinovose via a bifurcated 6-deoxy-6-sulfofructose transketolase/transaldolase pathway to both C<sub>2</sub>- and C<sub>3</sub>-sulfonate intermediates.	Borusak S et al.	—	2024	→
An ensemble deep learning model for predicting minimum inhibitory concentrations of antimicrobial peptides against pathogenic bacteria.	Chung CR et al.	—	2024	→
A New Model and Dating for the Evolution of Complex Plastids of Red Alga Origin.	Pietluch F et al.	—	2024	→
An internal linker and pH biosensing by phosphatidylinositol 5-phosphate regulate the function of the ESCRT-0 component TOM1.	Xiong W et al.	—	2024	→
An internal loop region is responsible for inherent target specificity of bacterial cold-shock proteins.	Hasegawa S et al.	—	2024	→
A novel shark VNAR antibody-based immunotoxin targeting TROP-2 for cancer therapy.	Xi X et al.	—	2024	→
APC mutations dysregulate alternative polyadenylation in cancer.	Gabel AM et al.	—	2024	→
Application of a metatranscriptomics technology, CSI-Dx, for the detection of pathogens associated with prosthetic joint infections.	Wright JR et al.	—	2024	→
Archaeal type six secretion system mediates contact-dependent antagonism.	Zachs T et al.	—	2024	→
A survey of the Desulfuromonadia "cytochromome" provides a glimpse of the unexplored diversity of multiheme cytochromes in nature.	Soares R et al.	—	2024	→
A trade-off between investment in molecular defense repertoires and growth in plants.	Giolai M et al.	—	2024	→
A versatile pipeline to identify convergently lost ancestral conserved fragments associated with convergent evolution of vocal learning.	Li X et al.	—	2024	→
BakRep - a searchable large-scale web repository for bacterial genomes, characterizations and metadata.	Fenske L et al.	—	2024	→
Benchmarking bacterial taxonomic classification using nanopore metagenomics data of several mock communities.	Van Uffelen A et al.	—	2024	→
Bidirectional Risk Modulator and Modifier Variant of Dilated and Hypertrophic Cardiomyopathy in BAG3.	Park J et al.	—	2024	→
Bioinformatics Goes Viral: I. Databases, Phylogenetics and Phylodynamics Tools for Boosting Virus Research.	Vello F et al.	—	2024	→
Birth of protein folds and functions in the virome.	Nomburg J et al.	—	2024	→
Borrelia PeptideAtlas: A proteome resource of common Borrelia burgdorferi isolates for Lyme research.	Reddy PJ et al.	—	2024	→
Building a community-driven bioinformatics platform to facilitate <i>Cannabis sativa</i> multi-omics research.	Mansueto L et al.	—	2024	→
Candidatus Desulforudis audaxviator dominates a 975 m deep groundwater community in central Sweden.	Westmeijer G et al.	—	2024	→
CHAMP delivers accurate taxonomic profiles of the prokaryotes, eukaryotes, and bacteriophages in the human microbiome.	Pita S et al.	—	2024	→
Characterization of the Rat Osteosarcoma Cell Line UMR-106 by Long-Read Technologies Identifies a Large Block of Amplified Genes Associated with Human Disease.	Scott AF et al.	—	2024	→
Chromosome-level genome assembly of the planthopper Nilaparvata muiri.	Wang C et al.	—	2024	→
Chromosome scale genome assembly and annotation of coconut cultivar Chowghat Green Dwarf.	Rajesh MK et al.	—	2024	→
Circularly assembled genome sequences of <i>Asticcacaulis</i> sp. strain MM231 and <i>Brevundimonas subvibrioides</i> MM232, isolated from a pond at Bielefeld University campus.	Laker B et al.	—	2024	→
CLN3 transcript complexity revealed by long-read RNA sequencing analysis.	Zhang HY et al.	—	2024	→
CNVoyant a machine learning framework for accurate and explainable copy number variant classification.	Schuetz RJ et al.	—	2024	→
COBRA-LIKE4 modulates cellulose synthase velocity and facilitates cellulose deposition in the secondary cell wall.	Xue JY et al.	—	2024	→
Comparative genomics reveals convergent signals associated with the high metabolism and longevity in birds and bats.	Matsuda Y et al.	—	2024	→
Comprehensive analyses of a large human gut Bacteroidales culture collection reveal species- and strain-level diversity and evolution.	Zhang ZJ et al.	—	2024	→
Comprehensive human respiratory genome catalogue underlies the high resolution and precision of the respiratory microbiome.	Li Y et al.	—	2024	→
Computational analysis of human gut microbial prolyl oligopeptidases (POPs) reveal candidate genes as therapeutics for celiac disease.	Nayak S et al.	—	2024	→
Computer-Aided Identification and Design of Ligands for Multi-Targeting Inhibition of a Molecular Acute Myeloid Leukemia Network.	Asfa SS et al.	—	2024	→
Conserved carotenoid pigmentation in reproductive organs of Charophyceae.	Rieseberg TP et al.	—	2024	→
Cryptic diversity patterns of subterranean estuaries.	Calderón-Gutiérrez F et al.	—	2024	→
DeepCheck: multitask learning aids in assessing microbial genome quality.	Wei G et al.	—	2024	→
DeepGOMeta for functional insights into microbial communities using deep learning-based protein function prediction.	Tawfiq R et al.	—	2024	→
De Novo Genome Assembly and Phylogenetic Analysis of <i>Cirsium nipponicum</i>.	Choi BY et al.	—	2024	→
De novo transcriptome analysis of the Indian squid Uroteuthis duvaucelii (Orbigny, 1848) from the Indian Ocean.	Krishnan N et al.	—	2024	→
Development and evaluation of statistical and artificial intelligence approaches with microbial shotgun metagenomics data as an untargeted screening tool for use in food production.	Beck KL et al.	—	2024	→
Diagnosis and management of invasive fungal diseases by next-generation sequencing: are we there yet?	Babady NE et al.	—	2024	→
Dichotomous intronic polyadenylation profiles reveal multifaceted gene functions in the pan-cancer transcriptome.	Sun J et al.	—	2024	→
Differential Conservation and Loss of Chicken Repeat 1 (CR1) Retrotransposons in Squamates Reveal Lineage-Specific Genome Dynamics Across Reptiles.	Gable SM et al.	—	2024	→
Differential interactions of Rickettsia species with tick microbiota in Rh. sanguineus and Rh. turanicus.	Maitre A et al.	—	2024	→
Digital Microbe: a genome-informed data integration framework for team science on emerging model organisms.	Veseli I et al.	—	2024	→
Direct testing of natural twister ribozymes from over a thousand organisms reveals a broad tolerance for structural imperfections.	McKinley LN et al.	—	2024	→
Diversity and Antifungal Susceptibilities of Yeasts from Mangroves in Hong Kong, China-A One Health Aspect.	Hau PT et al.	—	2024	→
Diversity and specificity of molecular functions in cyanobacterial symbionts.	Cameron ES et al.	—	2024	→
Diversity of Microglia-Derived Molecules with Neurotrophic Properties That Support Neurons in the Central Nervous System and Other Tissues.	Wiens KR et al.	—	2024	→
Draft genome sequences of <i>Butyrivibrio hungatei</i> DSM 14810 (JK 615<sup>T</sup>) and <i>Butyrivibrio fibrisolvens</i> DSM 3071 (D1<sup>T</sup>).	Berner K et al.	—	2024	→
EF-P and its paralog EfpL (YeiP) differentially control translation of proline-containing sequences.	Sieber A et al.	—	2024	→
Emergent ecological patterns and modelling of gut microbiomes in health and in disease.	Pasqualini J et al.	—	2024	→
Enhanced Specificity in Colorimetric LAMP Assay for <i>Sarocladium kiliense</i> Detection Using a Combination of Two Additives.	Wong YN et al.	—	2024	→
Enhancing lower respiratory tract infection diagnosis: implementation and clinical assessment of multiplex PCR-based and hybrid capture-based targeted next-generation sequencing.	Yin Y et al.	—	2024	→
Evidence for a Novel X Chromosome in Termites.	Fraser R et al.	—	2024	→
Evolution of retrocopies in the context of HUSH silencing.	Kozłowska-Masłoń J et al.	—	2024	→
Exon nomenclature and classification of transcripts database (ENACTdb): a resource for analyzing alternative splicing mediated proteome diversity.	Verma P et al.	—	2024	→
Expanded geographic distribution for two <i>Legionella pneumophila</i> sequence types of clinical concern.	Hamlin JAP et al.	—	2024	→
Extracellular plant subtilases dampen cold-shock peptide elicitor levels.	Chen C et al.	—	2024	→
Fine mapping of RNA isoform diversity using an innovative targeted long-read RNA sequencing protocol with novel dedicated bioinformatics pipeline.	Aucouturier C et al.	—	2024	→
Full-length target sequences of GeoMx digital spatial profiling probes reveal that gene-promiscuity predicts probe sensitivity to EDTA tissue decalcification.	Oszwald A et al.	—	2024	→
Functional effects of subsidies and stressors on benthic microbial communities along freshwater to marine gradients.	Anderson KJ et al.	—	2024	→
Functional implications of glycans and their curation: insights from the workshop held at the 16th Annual International Biocuration Conference in Padua, Italy.	Martinez K et al.	—	2024	→
Fungal Identifier (FId): An Updated Polymerase Chain Reaction-Restriction Fragment Length Polymorphism Approach to Ease Ascomycetous Yeast Isolates' Identification in Ecological Studies.	Abbà S et al.	—	2024	→
Fusarium Protein Toolkit: a web-based resource for structural and variant analysis of Fusarium species.	Kim HS et al.	—	2024	→
Gamma-delta T-cell large granular lymphocytic leukemia in the setting of rheumatologic diseases.	Gorodetskiy V et al.	—	2024	→
Genetic and genomic analysis of reproduction traits in holstein cattle using SNP chip data and imputed sequence level genotypes.	Schwarz L et al.	—	2024	→
Genetic Etiology in Pelvic Organ Prolapse: Role of Connective Tissue Homeostasis, Hormone Metabolism, and Oxidative Stress.	Jiang W et al.	—	2024	→
Genome-aware annotation of CRISPR guides validates targets in variant cell lines and enhances discovery in screens.	Lam S et al.	—	2024	→
Genome integrity sensing by the broad-spectrum Hachiman antiphage defense complex.	Tuck OT et al.	—	2024	→
Genome sequences of 70 multidrug-resistant Gram-negative isolates in high-risk neonates in the Northeast of Mexico.	Rodriguez-Orduña L et al.	—	2024	→
Genome-Wide Exploration of Thiamin Pyrophosphate Riboswitches in Medically Relevant Fungi Reveals Diverse Distribution and Implications for Antimicrobial Drug Targeting.	Vargas-Junior V et al.	—	2024	→
Genomic characterisation of an extended-spectrum β-Lactamase-producing Klebsiella pneumoniae isolate assigned to a novel sequence type (6914).	Akinyemi MO et al.	—	2024	→
Genomic characterization of a <i>bla</i> <sub>KPC-2</sub>-producing IncM2 plasmid harboring transposon ΔTn<i>6296</i> in <i>Klebsiella michiganensis</i>.	Song JM et al.	—	2024	→
Genomic exploration of retrocopies in Insect pests of plants and their role in the expansion of heat shock proteins superfamily as evolutionary targets.	Ahmad A et al.	—	2024	→
Genomic Insights into the Bactericidal and Fungicidal Potential of <i>Bacillus mycoides</i> b12.3 Isolated in the Soil of Olkhon Island in Lake Baikal, Russia.	Romanenko MN et al.	—	2024	→
Global analysis of the RNA-RNA interactome in Acinetobacter baumannii AB5075 uncovers a small regulatory RNA repressing the virulence-related outer membrane protein CarO.	Hamrock FJ et al.	—	2024	→
Global Globin Network and adopting genomic variant database requirements for thalassemia.	Halim-Fikri H et al.	—	2024	→
Gut heavy metal and antibiotic resistome of humans living in the high Arctic.	Hauptmann AL et al.	—	2024	→
Haplotype-based pangenomes reveal genetic variations and climate adaptations in moso bamboo populations.	Hou Y et al.	—	2024	→
Harnessing the power of AI in precision medicine: NGS-based therapeutic insights for colorectal cancer cohort.	Murcia Pienkowski V et al.	—	2024	→
Heritability and Genome-Wide Association Study of Dog Behavioral Phenotypes in a Commercial Breeding Cohort.	Bhowmik N et al.	—	2024	→
Human genomic DNA is widely interspersed with i-motif structures.	Peña Martinez CD et al.	—	2024	→
Human introns contain conserved tissue-specific cryptic poison exons.	Margasyuk S et al.	—	2024	→
Hybrid assembly and comparative genomics unveil insights into the evolution and biology of the red-legged partridge.	Eleiwa A et al.	—	2024	→
Identification and characterization of the lipoprotein <i>N</i>-acyltransferase in <i>Bacteroides</i>.	Armbruster KM et al.	—	2024	→
Identification and expression analysis of Phosphate Transporter 1 (PHT1) genes in the highly phosphorus-use-efficient Hakea prostrata (Proteaceae).	Nestor BJ et al.	—	2024	→
Identification of age-associated microbial changes via long-read 16S sequencing.	Toh KY et al.	—	2024	→
Identification of osteoporosis genes using family studies.	Schembri M et al.	—	2024	→
Impact of DNA extraction, PCR amplification, sequencing, and bioinformatic analysis on food-associated mock communities using PacBio long-read amplicon sequencing.	Baer M et al.	—	2024	→
Impact of the chemical modification of tRNAs anticodon loop on the variability and evolution of codon usage in proteobacteria.	Delgado S et al.	—	2024	→
Independent expansion, selection, and hypervariability of the <i>TBC1D3</i> gene family in humans.	Guitart X et al.	—	2024	→
Infectious bronchitis virus vaccination, but not the presence of XCR1, is correlated with large differences in chicken caecal microbiota.	Glendinning L et al.	—	2024	→
Influence of dexamethasone-induced matrices on the TM transcriptome.	Soundappan K et al.	—	2024	→
Inhibition of phototrophic iron oxidation by nitric oxide in ferruginous environments.	Nikeleit V et al.	—	2024	→
In silico discovery of druggable targets in Citrobacter koseri using echinoderm metabolites and molecular dynamics simulation.	Alhaidhal BA et al.	—	2024	→
In silico splicing analysis of the PMS2 gene: exploring alternative molecular mechanisms in PMS2-associated Lynch syndrome.	Munteanu CV et al.	—	2024	→
Integrative workflows for the characterization of hydrophobin and cerato-platanin in the marine fungus Paradendryphiella salina.	Landeta C et al.	—	2024	→
Interruption of the visual cycle in a novel animal model induces progressive vision loss resembling Stargardts Disease.	Sassone F et al.	—	2024	→
Interspecies differences in the transcriptome response of corals to acute heat stress.	Da-Anoy J et al.	—	2024	→
Isolation and characterization of a novel methanogen Methanosarcina hadiensis sp. nov. from subsurface Boom Clay pore water.	Giménez FJ et al.	—	2024	→
kMetaShot: a fast and reliable taxonomy classifier for metagenome-assembled genomes.	Defazio G et al.	—	2024	→
Latent Dirichlet allocation mixture models for nucleotide sequence analysis.	Wang B et al.	—	2024	→
LCRAnnotationsDB: a database of low complexity regions functional and structural annotations.	Ziemska-Legiecka J et al.	—	2024	→
Loss of ADAR1 protein induces changes in small RNA landscape in hepatocytes.	Roučová K et al.	—	2024	→
Lost in translation? Evidence for a muted proteomic response to thermal stress in a stenothermal Antarctic fish and possible evolutionary mechanisms.	Dowd WW et al.	—	2024	→
Measuring air metagenomic diversity in an agricultural ecosystem.	Giolai M et al.	—	2024	→
Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes.	Chen X et al.	—	2024	→
Membrane lipid homeostasis dually regulates conformational transition of phosphoethanolamine transferase EptA.	Ma Z et al.	—	2024	→
Menstrual cups to reduce bacterial vaginosis and STIs through reduced harmful sexual and menstrual practices among economically vulnerable women: protocol of a single arm trial in western Kenya.	Zulaika G et al.	—	2024	→
MeSS and assembly_finder: a toolkit for in silico metagenomic sample generation.	Chaabane F et al.	—	2024	→
Metagenomic characterisation of canine skin reveals a core healthy skin microbiome.	Whittle MJ et al.	—	2024	→
Metagenomic mining unveils a novel GH130 enzyme with exclusive xylanase activity over a wide temperature and pH ranges.	Hemeda AA et al.	—	2024	→
Microbial community dynamics in blood, faeces and oral secretions of neotropical bats in Casanare, Colombia.	Luna N et al.	—	2024	→
Microsatellites explorer: A database of short tandem repeats across genomes.	Provatas K et al.	—	2024	→
Mid-pass whole-genome sequencing in a Malagasy cohort uncovers body composition associations.	Hamid I et al.	—	2024	→
Modulation of AAV transduction and integration targeting by topoisomerase poisons.	Kasimsetty A et al.	—	2024	→
Modulation of diverse biological processes by CPSF, the master regulator of mRNA 3' ends.	Liu L et al.	—	2024	→
Movi: A fast and cache-efficient full-text pangenome index.	Zakeri M et al.	—	2024	→
MVP: a modular viromics pipeline to identify, filter, cluster, annotate, and bin viruses from metagenomes.	Coclet C et al.	—	2024	→
NanoMGT: Marker gene typing of low complexity mono-species metagenomic samples using noisy long reads.	Hallgren MB et al.	—	2024	→
Neolithic Yersinia pestis infections in humans and a dog.	Susat J et al.	—	2024	→
Novel class IIb microcins show activity against Gram-negative ESKAPE and plant pathogens.	Mortzfeld BM et al.	—	2024	→
Novel variant alters splicing of <i>TGFB2</i> in family with features of Loeys-Dietz syndrome.	Gordon ER et al.	—	2024	→
Oral Microbial Translocation Genes in Gastrointestinal Cancers: Insights from Metagenomic Analysis.	Wang L et al.	—	2024	→
OrthoPhyl-streamlining large-scale, orthology-based phylogenomic studies of bacteria at broad evolutionary scales.	Middlebrook EA et al.	—	2024	→
Petagraph: A large-scale unifying knowledge graph framework for integrating biomolecular and biomedical data.	Stear BJ et al.	—	2024	→
Phenotypic Characterization and Genome Analysis of New Broad-Spectrum Virulent Salmophage, Salmonella Phage KKP_3822, for Biocontrol of Multidrug-Resistant <i>Salmonella enterica</i> Strains.	Wójcicki M et al.	—	2024	→
PHPGAT: predicting phage hosts based on multimodal heterogeneous knowledge graph with graph attention network.	Liu F et al.	—	2024	→
PLEKv2: predicting lncRNAs and mRNAs based on intrinsic sequence features and the coding-net model.	Li A et al.	—	2024	→
Prediction of strain level phage-host interactions across the Escherichia genus using only genomic information.	Gaborieau B et al.	—	2024	→
Prickly Ash Seeds Improve the Ruminal Epithelial Development and Growth Performance of Hu Sheep by Modulating the Rumen Microbiota and Metabolome.	Li Q et al.	—	2024	→
Prokaryotic communities profiling of Indonesian hot springs using long-read Oxford Nanopore sequencing.	Wirajana IN et al.	—	2024	→
Proteogenomic reconstruction of organ-specific metabolic networks in an environmental sentinel species, the amphipod Gammarus fossarum.	Koenig N et al.	—	2024	→
Proteomics Can Rise to the Challenge of Pseudogenes' Coding Nature.	Vasylieva V et al.	—	2024	→
Real-time and programmable transcriptome sequencing with PROFIT-seq.	Zhang J et al.	—	2024	→
Relationship between the rumen microbiome and liver transcriptome in beef cattle divergent for feed efficiency.	Keogh K et al.	—	2024	→
Revealing differential expression patterns of piRNA in FACS blood cells of SARS-CoV-2 infected patients.	Kondratov KA et al.	—	2024	→
Revisiting the activity of two poly(vinyl chloride)- and polyethylene-degrading enzymes.	Stepnov AA et al.	—	2024	→
Rheumatoid arthritis patients harbour aberrant enteric bacteriophages with autoimmunity-provoking potential: a paired sibling study.	Hu F et al.	—	2024	→
RHNO1: at the crossroads of DNA replication stress, DNA repair, and cancer.	Jirapongwattana N et al.	—	2024	→
Ring finger protein 5 mediates STING degradation through ubiquitinating K135 and K155 in a teleost fish.	Qin X et al.	—	2024	→
RNA Editing by ADAR Adenosine Deaminases in the Cell Models of CAG Repeat Expansion Diseases: Significant Effect of Differentiation from Stem Cells into Brain Organoids in the Absence of Substantial Influence of CAG Repeats on the Level of Editing.	Kudriavskii VV et al.	—	2024	→
RNA G-quadruplex formation in biologically important transcribed regions: can two-tetrad intramolecular RNA quadruplexes be formed?	Basu P et al.	—	2024	→
Seeing the unseen in characterizing RNA editome during rice endosperm development.	Chen M et al.	—	2024	→
Sequence modeling and design from molecular to genome scale with Evo.	Nguyen E et al.	—	2024	→
Shedding light on the <i>DICER1</i> mutational spectrum of uncertain significance in malignant neoplasms.	Bug DS et al.	—	2024	→
Shotgun Analysis of Gut Microbiota with Body Composition and Lipid Characteristics in Crohn's Disease.	Bacsur P et al.	—	2024	→
Soil microbiomes show consistent and predictable responses to extreme events.	Knight CG et al.	—	2024	→
Somatic mutation rates scale with time not growth rate in long-lived tropical trees.	Satake A et al.	—	2024	→
SpanSeq: similarity-based sequence data splitting method for improved development and assessment of deep learning projects.	Ferrer Florensa A et al.	—	2024	→
Splam: a deep-learning-based splice site predictor that improves spliced alignments.	Chao KH et al.	—	2024	→
SpliceVarDB: A comprehensive database of experimentally validated human splicing variants.	Sullivan PJ et al.	—	2024	→
Standardization of gut microbiome analysis in sports.	Mancin L et al.	—	2024	→
StopKB: a comprehensive knowledgebase for nonsense suppression therapies.	Haas N et al.	—	2024	→
Strain-resolved de-novo metagenomic assembly of viral genomes and microbial 16S rRNAs.	Jochheim A et al.	—	2024	→
Structural insights into the enzymatic breakdown of azomycin-derived antibiotics by 2-nitroimdazole hydrolase (NnhA).	Ahmed FH et al.	—	2024	→
Syncope in Migraine: A Genome-Wide Association Study Revealing Distinct Genetic Susceptibility Variants Across Subtypes.	Lin W et al.	—	2024	→
Temperature, sediment resuspension, and salinity drive the prevalence of <i>Vibrio vulnificus</i> in the coastal Baltic Sea.	Fernández-Juárez V et al.	—	2024	→
The antibacterial activity of a novel highly thermostable endolysin, LysKP213, against Gram-negative pathogens is enhanced when combined with outer membrane permeabilizing agents.	Chu D et al.	—	2024	→
The central role of transfer RNAs in mistranslation.	Schuntermann DB et al.	—	2024	→
The Change Rate of the <i>Fbxl21</i> Gene and the Amino Acid Composition of Its Protein Correlate with the Species-Specific Lifespan in Placental Mammals.	Lyubetsky VA et al.	—	2024	→
The Delfos Platform: A Conceptual Model-Based Solution for the Enhancement of Precision Medicine.	Palacio AL et al.	—	2024	→
The evolutionary landscape of prokaryotic chromosome/plasmid balance.	Xue W et al.	—	2024	→
The GIAB genomic stratifications resource for human reference genomes.	Dwarshuis N et al.	—	2024	→
The hindgut microbiota of coconut rhinoceros beetles (<i>Oryctes rhinoceros</i>) in relation to their geographical populations.	Han C-J et al.	—	2024	→
The mayfly Neocloeon triangulifer senses decreasing oxygen availability (PO2) and responds by reducing ion uptake and altering gene expression.	Cochran JK et al.	—	2024	→
The phosphatase PP1 sustains global transcription by promoting RNA polymerase II pause release.	Wang Z et al.	—	2024	→
Therapeutic Potential of <i>Lactiplantibacillus plantarum</i> FB091 in Alleviating Alcohol-Induced Liver Disease through Gut-Liver Axis.	Lee SJ et al.	—	2024	→
The reference genome of an endangered Asteraceae, Deinandra increscens subsp. villosa, endemic to the Central Coast of California.	McEvoy SL et al.	—	2024	→
Trajectory of antibiotic resistome response to antibiotics gradients: A comparative study from pharmaceutical and associated wastewater treatment plants to receiving river.	Wang N et al.	—	2024	→
Transcriptional and epigenetic characterization of a new in vitro platform to model the formation of human pharyngeal endoderm.	Cipriano A et al.	—	2024	→
Transforming Clinical Research: The Power of High-Throughput Omics Integration.	Vitorino R	—	2024	→
Transposition with Tn3-family elements occurs through interaction with the host β-sliding clamp processivity factor.	Tang Y et al.	—	2024	→
Tyzzerella nexilis strains enriched in mobile genetic elements are involved in progressive multiple sclerosis.	Takewaki D et al.	—	2024	→
Ultrasound Control of Genomic Regulatory Toolboxes for Cancer Immunotherapy.	Wu Y et al.	—	2024	→
Understanding the natural language of DNA using encoder-decoder foundation models with byte-level precision.	Malusare A et al.	—	2024	→
Understanding the variant landscape, and genetic epidemiology of Multiple Endocrine Neoplasia in India.	Vatsyayan A et al.	—	2024	→
Unraveling the evolutionary trajectory of LHCI in red-lineage algae: Conservation, diversification, and neolocalization.	Kumazawa M et al.	—	2024	→
UV-C Exposure Enhanced the Cd<sup>2+</sup> Adsorption Capability of the Radiation-Resistant Strain <i>Sphingomonas</i> sp. M1-B02.	Li Y et al.	—	2024	→
Viability discrimination of bacterial microbiomes in home kitchen dish sponges using propidium monoazide treatment.	Carstens CK et al.	—	2024	→
Viroid-like colonists of human microbiomes.	Zheludev IN et al.	—	2024	→
Viromes vs. mixed community metagenomes: choice of method dictates interpretation of viral community ecology.	Kosmopoulos JC et al.	—	2024	→
Whole genome sequencing approaches for taxonomic profiling and evaluation of wastewater quality.	Behl S et al.	—	2024	→
Whole-Genome Sequencing of <i>Peribacillus frigoritolerans</i> Strain d21.2 Isolated in the Republic of Dagestan, Russia.	Romanenko MN et al.	—	2024	→
Whole-genome sequencing of <i>Streptococcus uberis</i> isolated from cows with mastitis in Thuringia.	Thomas C et al.	—	2024	→
Whole-genome sequencing reveals transmission pattern and drug resistance of <i>Mycobacterium tuberculosis</i> intra- or inter-hosts.	Ding F et al.	—	2024	→
X-linked deletion of Crossfirre, Firre, and Dxz4 in vivo uncovers diverse phenotypes and combinatorial effects on autosomes.	Hasenbein TP et al.	—	2024	→