The CHRNA5/A3/B4 gene cluster and tobacco, alcohol, cannabis, inhalants and other substance use initiation: replication and new findings using mixture analyses.
- Authors
- Lubke, Gitta H; Stephens, Sarah H; Lessem, Jeffrey M; Hewitt, John K; Ehringer, Marissa A
- Year
- 2012
- Journal
- Behavior genetics
- PMID
- 22382757
- DOI
- 10.1007/s10519-012-9529-y
- PMCID
- PMC3743232
Multiple studies have provided evidence for genetic associations between single nucleotide polymorphisms (SNPs) located on the CHRNA5/A3/B4 gene cluster and various phenotypes related to Nicotine Dependence (Greenbaum et al. 2009). Only a few studies have investigated other substances of abuse. The current study has two aims, (1) to extend previous findings by focusing on associations between the CHRNA5/A3/B4 gene cluster and age of initiation of several different substances, and (2) to investigate heterogeneity in age of initiation across the different substances. All analyses were conducted with a subset of the Add Health study with available genetic data. The first aim was met by modeling onset of tobacco, alcohol, cannabis, inhalants, and other substance use using survival mixture analysis (SMA). Ten SNPs in CHRNA5/A3/B4 were used to predict phenotypic differences in the risk of onset, and differences between users and non-users. The survival models aim at investigating differences in the risk of initiation across the 5-18 age range for each phenotype separately. Significant or marginally significant genetic effects were found for all phenotypes. The genetic effects were mainly related to the risk of initiation and to a lesser extent to discriminating between users and non-users. To address the second goal, the survival analyses were complemented by a latent class analysis that modeled all phenotypes jointly. One of the ten SNPs was found to predict differences between the early and late onset classes. Taken together, our study provides evidence for a general role of the CHRNA5/A3/B4 gene cluster in substance use initiation that is not limited to nicotine and alcohol.
Heatmap showing Linkage Disequilibrium (r2) in Caucasians of the 10 SNPs on CHRNA5/A3/B4 used in this study
LLM interpretation
This is a linkage disequilibrium (LD) heatmap showing $r^2$ values for 10 single nucleotide polymorphisms (SNPs) across the *CHRNA5/A3/B4* gene cluster in Caucasians. The visualization uses a triangular grid where the intensity of the gray shading represents the strength of the correlation between pairs of SNPs. The highest LD value visible is 80, located between SNPs 7 and 8, with various other moderate correlations (e.g., 68, 65, 63) distributed across the plot.
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