Multiple cholinergic nicotinic receptor genes affect nicotine dependence risk in African and European Americans.
- Authors
- Saccone, N L; Schwantes-An, T-H; Wang, J C; Grucza, R A; Breslau, N; Hatsukami, D; Johnson, E O; Rice, J P; Goate, A M; Bierut, L J
- Year
- 2010
- Journal
- Genes, brain, and behavior
- PMID
- 20584212
- DOI
- 10.1111/j.1601-183X.2010.00608.x
- PMCID
- PMC2970751
Several independent studies show that the chromosome 15q25.1 region, which contains the CHRNA5-CHRNA3-CHRNB4 gene cluster, harbors variants strongly associated with nicotine dependence, other smoking behaviors, lung cancer and chronic obstructive pulmonary disease. We investigated whether variants in other cholinergic nicotinic receptor subunit (CHRN) genes affect the risk of nicotine dependence in a new sample of African Americans (AAs) (N = 710). We also analyzed this AA sample together with a European American (EA) sample (N = 2062, 1608 of which have been previously studied), allowing for differing effects in the two populations. Cases are current nicotine-dependent smokers and controls are non-dependent smokers. Variants in or near CHRND-CHRNG, CHRNA7 and CHRNA10 show modest association with nicotine dependence risk in the AA sample. In addition, CHRNA4, CHRNB3-CHRNA6 and CHRNB1 show association in at least one population. CHRNG and CHRNA4 harbor single nucleotide polymorphisms (SNPs) that have opposite directions of effect in the two populations. In each of the population samples, these loci substantially increase the trait variation explained, although no loci meet Bonferroni-corrected significance in the AA sample alone. The trait variation explained by three key associated SNPs in CHRNA5-CHRNA3-CHRNB4 is 1.9% in EAs and also 1.9% in AAs; this increases to 4.5% in EAs and 7.3% in AAs when we add six variants representing associations at other CHRN genes. Multiple nicotinic receptor subunit genes outside chromosome 15q25 are likely to be important in the biological processes and development of nicotine dependence, and some of these risks may be shared across diverse populations.
No figures extracted from this document.
| # | Section | Preview |
|---|---|---|
| 40 | DISCUSSION AND CONCLUSIONS | The chromosome 15q25 region containing CHRNA5-CHRNA3-CHRNB4 has been consistently associated with⦠|
| 41 | DISCUSSION AND CONCLUSIONS | Given these multiple findings in CHRN genes, an important question is the proportion of phenotypic⦠|
| 42 | DISCUSSION AND CONCLUSIONS | In summary, this work provides further evidence that multiple cholinergic nicotinic receptor genes⦠|
| Name | Type |
|---|---|
| AA | cohort |
| AA-only sample local | cohort |
| AA sample | cohort |
| African American | cohort |
| African-Americans | cohort |
| African-ancestry samples local | cohort |
| age | phenotype |
| Asian | cohort |
| Australian population | cohort |
| Australian subjects local | cohort |
| brain | anatomy |
| case/control status | phenotype |
| CEU | cohort |
| CHRNA10 | gene |
| Chrna3 | gene |
| Chrna4 | gene |
| CHRNA5 | gene |
| CHRNA5-CHRNA3-CHRNB4 cluster | gene |
| Chrna6 | gene |
| Chrna7 | gene |
| Chrnb1 | gene |
| Chrnb3 | gene |
| CHRNB3-CHRNA6 local | gene |
| Chrnb4 | gene |
| CHRND | gene |
| CHRNG | gene |
| CHRN genes local | gene |
| chronic obstructive pulmonary disease | phenotype |
| Cigarettes-per-day local | phenotype |
| COGEND | cohort |
| Combined European American sample local | cohort |
| combined sample | cohort |
| dbSNP build 129 local | drug |
| dizziness in response to tobacco local | phenotype |
| EA | cohort |
| EAs | cohort |
| EIGENSTRAT analysis local | drug |
| European-American COGEND subjects local | cohort |
| European ancestry | cohort |
| European-ancestry US/Australia cohort local | cohort |
| European-descent Australians local | cohort |
| European population | cohort |
| Europeans | cohort |
| expanded United States sample local | cohort |
| FTND | phenotype |
| full sample | cohort |
| gender local | drug |
| HapMap3 | cohort |
| HapMap CEU | cohort |
| HapMap HCB-JPT local | cohort |
| Illumina Golden Gate local | drug |
| lung cancer | phenotype |
| NCBI Human Reference Build 36.2 local | drug |
| New European American sample local | cohort |
| nicotine | drug |
| nicotine dependence | phenotype |
| nicotinic acetylcholine receptor | drug |
| Original European American sample local | cohort |
| phenotypic variation | phenotype |
| population | cohort |
| principal components | drug |
| rs10438287 local | variant |
| rs10958726 local | variant |
| rs12915265 local | variant |
| rs13277254 local | variant |
| rs13277524 | variant |
| rs16925377 local | variant |
| rs16969968 | variant |
| rs1881492 local | variant |
| rs1909884 local | variant |
| rs1955186 local | variant |
| rs2229959 local | variant |
| rs2231532 local | variant |
| rs2236196 | variant |
| rs2302761 local | variant |
| rs2302763 local | variant |
| rs3855924 local | variant |
| rs4779565 local | variant |
| rs4796418 local | variant |
| rs4952 local | variant |
| rs578776 | variant |
| rs588765 | variant |
| rs6494212 | variant |
| rs7210231 local | variant |
| rs904951 local | variant |
| rs904952 local | variant |
| Sequenom iPlex local | drug |
| sex | phenotype |
| smoking | phenotype |
| smoking behavior | phenotype |
| smoking cessation | phenotype |
| smoking prevalence | phenotype |
| smoking quantity | phenotype |
| Smoking risk local | phenotype |
| SNP | cohort |
| SNP_CHRNA10 local | variant |
| SNP_CHRNA7 local | variant |
| SNP_CHRNG local | variant |
| SNPs (Table 3) local | variant |
| SNP term local | variant |
| United States | cohort |
| YRI | cohort |
No uploaded files.
In this knowledge base
External
| Title | Authors | Journal | Year | Link |
|---|---|---|---|---|
| Genetic Loci Influencing Cue-Reactivity in Heterogeneous Stock Rats. | King CP et al. | β | 2025 | β |
| Deciphering gene contributions and etiologies of somatic mutational signatures of cancer. | Ji X et al. | β | 2023 | β |
| Genome-wide mapping of gene-microbe interactions in the murine lung microbiota based on quantitative microbial profiling. | Chung CJ et al. | β | 2023 | β |
| Hepatocyte CHRNA4 mediates the MASH-promotive effects of immune cell-produced acetylcholine and smoking exposure in mice and humans. | Pan C et al. | β | 2023 | β |
| Hyperconnectivity of Two Separate Long-Range Cholinergic Systems Contributes to the Reorganization of the Brain Functional Connectivity during Nicotine Withdrawal in Male Mice. | Carrette LLG et al. | β | 2023 | β |
| Sex and diet-dependent gene alterations in human and rat brains with a history of nicotine exposure. | Vargas-Medrano J et al. | β | 2023 | β |
| Deciphering of Somatic Mutational Signatures of Cancer | Ji X et al. | β | 2022 | β |
| Association Study of Polymorphisms in Neuronal Nicotinic Acetylcholine Receptor Subunit Genes With Schizophrenia in the Han Chinese Population. | Li YY et al. | β | 2021 | β |
| Cholinergic receptor nicotinic beta 3 subunit polymorphisms and smoking in male Chinese patients with schizophrenia. | Shi J et al. | β | 2021 | β |
| Gene-based association analysis reveals involvement of LAMA5 and cell adhesion pathways in nicotine dependence in African- and European-American samples. | Fan R et al. | β | 2021 | β |
| Studying the Utility of Using Genetics to Predict Smoking-Related Outcomes in a Population-Based Study and a Selected Cohort. | Bray MJ et al. | β | 2021 | β |
| Identification of genetic polymorphisms modulating nausea and vomiting in two series of opioid-treated cancer patients. | Colombo F et al. | β | 2020 | β |
| Profile of the Nicotinic Cholinergic Receptor Alpha 7 Subunit Gene Expression is Associated with Response to Varenicline Treatment. | Santos JR et al. | β | 2020 | β |
| Analysis of lncRNA-miRNA-mRNA Interactions in Hyper-proliferative Human Pulmonary Arterial Smooth Muscle Cells. | Chinnappan M et al. | β | 2019 | β |
| Determining population stratification and subgroup effects in association studies of rare genetic variants for nicotine dependence. | Hsieh AR et al. | β | 2019 | β |
| Distinctive single-channel properties of Ξ±4Ξ²2-nicotinic acetylcholine receptor isoforms. | Weltzin MM et al. | β | 2019 | β |
| Nicotine consumption during the prodromal phase of schizophrenia - a review of the literature. | Gogos A et al. | β | 2019 | β |
| A Large-Scale Multi-ancestry Genome-wide Study Accounting for Smoking Behavior Identifies Multiple Significant Loci for Blood Pressure. | Sung YJ et al. | β | 2018 | β |
| A little rein on addiction. | Mathuru AS | β | 2018 | β |
| Toward the implementation of genomic applications for smoking cessation and smoking-related diseases. | Ramsey AT et al. | β | 2018 | β |
| Examination of the Involvement of Cholinergic-Associated Genes in Nicotine Behaviors in European and African Americans. | Melroy-Greif WE et al. | β | 2017 | β |
| Significant association of the CHRNB3-CHRNA6 gene cluster with nicotine dependence in the Chinese Han population. | Wen L et al. | β | 2017 | β |
| Associations of rare nicotinic cholinergic receptor gene variants to nicotine and alcohol dependence. | Zuo L et al. | β | 2016 | β |
| CHRNA4 and ANKK1 Polymorphisms Influence Smoking-Induced Nicotinic Acetylcholine Receptor Upregulation. | Esterlis I et al. | β | 2016 | β |
| Converging findings from linkage and association analyses on susceptibility genes for smoking and other addictions. | Yang J et al. | β | 2016 | β |
| Crucial roles of the CHRNB3-CHRNA6 gene cluster on chromosome 8 in nicotine dependence: update and subjects for future research. | Wen L et al. | β | 2016 | β |
| Differential Ξ±4(+)/(-)Ξ²2 Agonist-binding Site Contributions to Ξ±4Ξ²2 Nicotinic Acetylcholine Receptor Function within and between Isoforms. | Lucero LM et al. | β | 2016 | β |
| Evidence for Association Between Low Frequency Variants in CHRNA6/CHRNB3 and Antisocial Drug Dependence. | Kamens HM et al. | β | 2016 | β |
| Genetic variants of CHRNA5-A3 and CHRNB3-A6 predict survival of patients with advanced non-small cell lung cancer. | Wang Y et al. | β | 2016 | β |
| nAChR dysfunction as a common substrate for schizophrenia and comorbid nicotine addiction: Current trends and perspectives. | Parikh V et al. | β | 2016 | β |
| Nicotinic acetylcholine receptors: upregulation, age-related effects and associations with drug use. | Melroy-Greif WE et al. | β | 2016 | β |
| Nicotinic cholinergic and dopaminergic receptor mRNA expression in male and female rats with high or low preference for nicotine. | Gozen O et al. | β | 2016 | β |
| Rare, low frequency and common coding variants in CHRNA5 and their contribution to nicotine dependence in European and African Americans. | Olfson E et al. | β | 2016 | β |
| Replicated Risk Nicotinic Cholinergic Receptor Genes for Nicotine Dependence. | Zuo L et al. | β | 2016 | β |
| Smokescreen: a targeted genotyping array for addiction research. | Baurley JW et al. | β | 2016 | β |
| Assessment of cigarette smoking status with respect to symptomatic manifestation in first-episode schizophrenia patients. | Misiak B et al. | β | 2015 | β |
| CHRNA7 and CHRFAM7A mRNAs: co-localized and their expression levels altered in the postmortem dorsolateral prefrontal cortex in major psychiatric disorders. | Kunii Y et al. | β | 2015 | β |
| Duplicated copy of CHRNA7 increases risk and worsens prognosis of COPD and lung cancer. | Yang L et al. | β | 2015 | β |
| Genome-wide meta-analysis reveals common splice site acceptor variant in CHRNA4 associated with nicotine dependence. | Hancock DB et al. | β | 2015 | β |
| Lack of Associations of CHRNA5-A3-B4 Genetic Variants with Smoking Cessation Treatment Outcomes in Caucasian Smokers despite Associations with Baseline Smoking. | Tyndale RF et al. | β | 2015 | β |
| Lung cancer screening-why do it? Tobacco, the history of screening, and future challenges. | de Groot PM et al. | β | 2015 | β |
| Nicotinic receptor contributions to smoking: insights from human studies and animal models. | Brunzell DH et al. | β | 2015 | β |
| Return of individual genetic results in a high-risk sample: enthusiasm and positive behavioral change. | Hartz SM et al. | β | 2015 | β |
| The contribution of rare and common variants in 30 genes to risk nicotine dependence. | Yang J et al. | β | 2015 | β |
| The DYX2 locus and neurochemical signaling genes contribute to speech sound disorder and related neurocognitive domains. | Eicher JD et al. | β | 2015 | β |
| The Role of Nicotine in Schizophrenia. | Featherstone RE et al. | β | 2015 | β |
| CHRNB3 c.-57A>G functional promoter change affects Parkinson's disease and smoking. | Bar-Shira A et al. | β | 2014 | β |
| Gene-environment interaction. | Manuck SB et al. | β | 2014 | β |
| Genetic Association of CHRNB3 and CHRNA6 Gene Polymorphisms with Nicotine Dependence Syndrome Scale in Korean Population. | Won WY et al. | β | 2014 | β |
| Genetic variants and early cigarette smoking and nicotine dependence phenotypes in adolescents. | O'Loughlin J et al. | β | 2014 | β |
| Genetic variation within the Chrna7 gene modulates nicotine reward-like phenotypes in mice. | Harenza JL et al. | β | 2014 | β |
| Introduction to deep sequencing and its application to drug addiction research with a focus on rare variants. | Wang S et al. | β | 2014 | β |
| Significant associations of CHRNA2 and CHRNA6 with nicotine dependence in European American and African American populations. | Wang S et al. | β | 2014 | β |
| Smoking cessation and the risk of diabetes mellitus and impaired fasting glucose: three-year outcomes after a quit attempt. | Stein JH et al. | β | 2014 | β |
| The association between CHRN genetic variants and dizziness at first inhalation of cigarette smoke. | Pedneault M et al. | β | 2014 | β |
| Association between a 15q25 gene variant, nicotine-related habits, lung cancer and COPD among 56,307 individuals from the HUNT study in Norway. | Gabrielsen ME et al. | β | 2013 | β |
| CHRNA5-A3-B4 genetic variants alter nicotine intake and interact with tobacco use to influence body weight in Alaska Native tobacco users. | Zhu AZ et al. | β | 2013 | β |
| Distinct loci in the CHRNA5/CHRNA3/CHRNB4 gene cluster are associated with onset of regular smoking. | Stephens SH et al. | β | 2013 | β |
| Nicotinic acetylcholine receptor variation and response to smoking cessation therapies. | Bergen AW et al. | β | 2013 | β |
| Nominal association with CHRNA4 variants and nicotine dependence. | Kamens HM et al. | β | 2013 | β |
| Polygenic risk and the developmental progression to heavy, persistent smoking and nicotine dependence: evidence from a 4-decade longitudinal study. | Belsky DW et al. | β | 2013 | β |
| Using rodents to model schizophrenia and substance use comorbidity. | Ng E et al. | β | 2013 | β |
| Alpha7 nicotinic acetylcholine receptors modulate motivation to self-administer nicotine: implications for smoking and schizophrenia. | Brunzell DH et al. | β | 2012 | β |
| Assessing the impact of nicotine dependence genes on the risk of facial clefts: An example of the use of national registry and biobank data. | Jugessur A et al. | β | 2012 | β |
| Associations between variation in CHRNA5-CHRNA3-CHRNB4, body mass index and blood pressure in the Northern Finland Birth Cohort 1966. | Kaakinen M et al. | β | 2012 | β |
| Dissection of the phenotypic and genotypic associations with nicotinic dependence. | Chen LS et al. | β | 2012 | β |
| Genome-wide meta-analyses of smoking behaviors in African Americans. | David SP et al. | β | 2012 | β |
| Impact of human D398N single nucleotide polymorphism on intracellular calcium response mediated by Ξ±3Ξ²4Ξ±5 nicotinic acetylcholine receptors. | TammimΓ€ki A et al. | β | 2012 | β |
| Influence of common genetic variation on lung cancer risk: meta-analysis of 14 900 cases and 29 485 controls. | Timofeeva MN et al. | β | 2012 | β |
| Pathway analysis of smoking quantity in multiple GWAS identifies cholinergic and sensory pathways. | Harari O et al. | β | 2012 | β |
| Schizophrenia risk polymorphisms in the TCF4 gene interact with smoking in the modulation of auditory sensory gating. | Quednow BB et al. | β | 2012 | β |
| Smoking cessation pharmacogenetics: analysis of varenicline and bupropion in placebo-controlled clinical trials. | King DP et al. | β | 2012 | β |
| Biomarkers to optimize the treatment of nicotine dependence. | Schnoll RA et al. | β | 2011 | β |
| Genetic vulnerability and susceptibility to substance dependence. | Bierut LJ | β | 2011 | β |
| Neural systems governed by nicotinic acetylcholine receptors: emerging hypotheses. | Miwa JM et al. | β | 2011 | β |
| Nicotinic acetylcholine receptor variants associated with susceptibility to chronic obstructive pulmonary disease: a meta-analysis. | Zhang J et al. | β | 2011 | β |
| Rare nonsynonymous variants in alpha-4 nicotinic acetylcholine receptor gene protect against nicotine dependence. | Xie P et al. | β | 2011 | β |
| The Role of the Habenula in Nicotine Addiction. | Baldwin PR et al. | β | 2011 | β |
| Uncovering hidden variance: pair-wise SNP analysis accounts for additional variance in nicotine dependence. | Culverhouse RC et al. | β | 2011 | β |