Multi-ancestral genome-wide association study of clinically defined nicotine dependence reveals strong genetic correlations with other substance use disorders and health-related traits.
- Authors
- Johnson, Emma C; Lai, Dongbing; Balbona, Jared V; Miller, Alex P; Hatoum, Alexander S; Deak, Joseph D; Jennings, Mariela; Baranger, David A A; Galimberti, Marco; Sanichwankul, Kittipong; Thorgeirsson, Thorgeir; Colbert, Sarah M C; Adhikari, Keyrun; Docherty, Anna R; Degenhardt, Louisa; Edwards, Tobias; Fox, Louis; Giannelis, Alexandros; Jeffries, Paul W; Korhonen, Tellervo; Morrison, Claire L; Nunez, Yaira Z; Palviainen, Teemu; Su, Mei-Hsin; Romero Villela, Pamela N; Wetherill, Leah; Willoughby, Emily A; Zellers, Stephanie M; Bierut, Laura J; Buchwald, Jadwiga; Copeland, William E; Corley, Robin P; Friedman, Naomi P; Foroud, Tatiana M; Gillespie, Nathan A; Gizer, Ian R; Heath, Andrew C; Hickie, Ian B; Kaprio, Jaakko; Keller, Matthew C; Lee, James J; Lind, Penelope; Madden, Pamela A; Maes, Hermine H M; Martin, Nicholas G; McGue, Matt; Medland, Sarah E; Nelson, Elliot C; Pearson, John; Porjesz, Bernice; Stallings, Michael C; Vrieze, Scott; Wilhelmson, Kirk C; Kranzler, Henry R; Walters, Raymond K; Polimanti, Renato; Malison, Robert; Zhou, Hang; Stefansson, Kari; Sanchez-Roige, Sandra; Potenza, Marc; Mutirangura, Apiwat; Shotelersuk, Vorasuk; Kalayasiri, Rasmon; Edenberg, Howard J; Gelernter, Joel; Agrawal, Arpana
- Year
- 2025
- Journal
- Psychological medicine
- PMID
- 40831304
- DOI
- 10.1017/S0033291725100883
- PMCID
- PMC12360691
- Preprint
- Multi-ancestral genome-wide association study of clinically defined nicotine dependence reveals strong genetic correlations with other substance use disorders and health-related traits. (2025)
BACKGROUND: Genetic research on nicotine dependence has utilized multiple assessments that are in weak agreement. METHODS: We conducted a genome-wide association study (GWAS) of nicotine dependence defined using the Diagnostic and Statistical Manual of Mental Disorders (DSM-NicDep) in 61,861 individuals (47,884 of European ancestry [EUR], 10,231 of African ancestry, and 3,746 of East Asian ancestry) and compared the results to other nicotine-related phenotypes. RESULTS: We replicated the well-known association at the locus (lead single-nucleotide polymorphism [SNP]: rs147144681, Β =Β 1.27E-11 in EUR; lead SNPΒ =Β rs2036527, Β =Β 6.49e-13 in cross-ancestry analysis). DSM-NicDep showed strong positive genetic correlations with cannabis use disorder, opioid use disorder, problematic alcohol use, lung cancer, material deprivation, and several psychiatric disorders, and negative correlations with respiratory function and educational attainment. A polygenic score of DSM-NicDep predicted DSM-5 tobacco use disorder criterion count and all 11 individual diagnostic criteria in the independent National Epidemiologic Survey on Alcohol and Related Conditions-III sample. In genomic structural equation models, DSM-NicDep loaded more strongly on a previously identified factor of general addiction liability than a "problematic tobacco use" factor (a combination of cigarettes per day and nicotine dependence defined by the FagerstrΓΆm Test for Nicotine Dependence). Finally, DSM-NicDep showed a strong genetic correlation with a GWAS of tobacco use disorder as defined in electronic health records (EHRs). CONCLUSIONS: Our results suggest that combining the wide availability of diagnostic EHR data with nuanced criterion-level analyses of DSM tobacco use disorder may produce new insights into the genetics of this disorder.
Comparing genetic correlations (r g) for DSM-NicDep, FTND, ICD-TUD, and CPD with other traits in European ancestry data. Traits include other substance use disorders (CanUD, cannabis use disorder [Levey et al., 2023]; OUD, opioid use disorder [Deak et al., 2022]; PAU, problematic alcohol use [Zhou et al., 2023]; ICD-TUD, ICD-based tobacco use disorder [Toikumo et al., 2024]), substance use behaviors (CanUse, cannabis ever-use [Pasman et al., 2018]; DPW, drinks per week [Saunders et al., 2022]; SmkInit, smoking initiation [Saunders et al., 2022]; SmkCessation, smoking cessation [Saunders et al., 2022]), psychiatric disorders and other mental health phenotypes (ADHD, attention deficit hyperactivity disorder [Demontis et al., 2023]; PTSD, post-traumatic stress disorder [Nievergelt et al., 2019]), biomarkers (Cot + HC, cotinine +3-hydroxycotinine [Buchwald et al., 2021]), lung health-related traits (FEV1, forced expiratory volume in 1 s), risk tolerance (LinnΓ©r et al., 2019), socioeconomic status-related traits (Edu attainment, educational attainment [Lee et al., 2018]; TDI, Townsend Deprivation Index]), executive function (EF [Hatoum, Morrison, et al., 2023]), and anthropometric measures (BMI, body mass index [Yengo et al., 2018]; height [Yengo et al., 2022]). * indicates r gs that significantly differ between DSM-NicDep and FTND at πΌ = 0.002 (Bonferroni correction for 24 comparisons).
A modified Addiction-Risk-Factor model. This model is patterned upon the common factor model in Figure 1A of Hatoum et al., 2022, but updated with new, larger versions of the OUD (Deak et al., 2022), PAU (Zhou et al., 2023), and CanUD GWAS (Levey et al., 2023) and using three different phenotypes for tobacco GWAS. (a) DSM-NicDep. (b) PTU (Hatoum et al., 2022) GWAS. (c) ICD-TUD (Toikumo et al., 2024). *Significant loadings at p < 0.05. Addiction-rf, the Addiction-Risk-Factor; CanUD, cannabis use disorder; DSM-NicDep, nicotine dependence; ICD-TUD, ICD-based tobacco use disorder; OUD, opioid use disorder; PAU, problematic alcohol use.
Polygenic scores (PGSs) for DSM-NicDep (a), FTND (b), and DSM-NicDep, FTND, ICD-TUD, and CPD (c) predict individual DSM-5 nicotine use disorder and FTND criteria and total criterion or item counts, respectively, in the European ancestry subset of the NESARC-III sample. Filled circles represent estimates that were significant after FDR correction, while open circles represent estimates that were not significant after FDR correction. Hazardous = Recurrent use in physically hazardous situations; Fail = Recurrent use resulting in failure to fulfill major role obligations at work, school, or home; Tolerance = Marked need for increased amount to get the same effect or diminished effect of the same amount; TimeSpent = Great deal of time spent in activities necessary to obtain or use; GiveUp = Important recreational, social, or occupational activities given up or reduced; Problems = Use despite knowledge of persistent/recurrent physical/psychological problems; Larger = Taken over larger amounts/longer periods than intended; Withdrawal = Withdrawal syndrome or use to relieve/avoid syndrome; Cutdown = Persistent desire or unsuccessful attempts to cut down or control use; Crave = Craving or strong urge or desire to use; Social = Persistent use despite recurring social/interpersonal problems caused or exacerbated by use; FTND1_within30min = How soon after you wake up do you smoke your first cigarette?; FTND2_prohibited = Do you find it difficult to refrain from smoking in places where it is forbidden?; FTND3_morning = Which cigarette would you hate most to give up?; FTND5_waking = Do you smoke more frequently during the first hours after waking than during the rest of the day?
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External
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| Transcription factors implicated in substance use disorder, from immediate early genes to altered gene expression. | Orr E et al. | β | 2026 | β |