Thirty new loci for age at menarche identified by a meta-analysis of genome-wide association studies.
- Authors
- Elks, Cathy E; Perry, John R B; Sulem, Patrick; Chasman, Daniel I; Franceschini, Nora; He, Chunyan; Lunetta, Kathryn L; Visser, Jenny A; Byrne, Enda M; Cousminer, Diana L; Gudbjartsson, Daniel F; Esko, TΓ΅nu; Feenstra, Bjarke; Hottenga, Jouke-Jan; Koller, Daniel L; Kutalik, ZoltΓ‘n; Lin, Peng; Mangino, Massimo; Marongiu, Mara; McArdle, Patrick F; Smith, Albert V; Stolk, Lisette; van Wingerden, Sophie H; Zhao, Jing Hua; Albrecht, Eva; Corre, Tanguy; Ingelsson, Erik; Hayward, Caroline; Magnusson, Patrik K E; Smith, Erin N; Ulivi, Shelia; Warrington, Nicole M; Zgaga, Lina; Alavere, Helen; Amin, Najaf; Aspelund, Thor; Bandinelli, Stefania; Barroso, InΓͺs; Berenson, Gerald S; Bergmann, Sven; Blackburn, Hannah; Boerwinkle, Eric; Buring, Julie E; Busonero, Fabio; Campbell, Harry; Chanock, Stephen J; Chen, Wei; Cornelis, Marilyn C; Couper, David; Coviello, Andrea D; d'Adamo, Pio; de Faire, Ulf; de Geus, Eco J C; Deloukas, Panos; DΓΆring, Angela; Smith, George Davey; Easton, Douglas F; Eiriksdottir, Gudny; Emilsson, Valur; Eriksson, Johan; Ferrucci, Luigi; Folsom, Aaron R; Foroud, Tatiana; Garcia, Melissa; Gasparini, Paolo; Geller, Frank; Gieger, Christian; GIANT Consortium; Gudnason, Vilmundur; Hall, Per; Hankinson, Susan E; Ferreli, Liana; Heath, Andrew C; Hernandez, Dena G; Hofman, Albert; Hu, Frank B; Illig, Thomas; JΓ€rvelin, Marjo-Riitta; Johnson, Andrew D; Karasik, David; Khaw, Kay-Tee; Kiel, Douglas P; KilpelΓ€inen, Tuomas O; Kolcic, Ivana; Kraft, Peter; Launer, Lenore J; Laven, Joop S E; Li, Shengxu; Liu, Jianjun; Levy, Daniel; Martin, Nicholas G; McArdle, Wendy L; Melbye, Mads; Mooser, Vincent; Murray, Jeffrey C; Murray, Sarah S; Nalls, Michael A; Navarro, Pau; Nelis, Mari; Ness, Andrew R; Northstone, Kate; Oostra, Ben A; Peacock, Munro; Palmer, Lyle J; Palotie, Aarno; ParΓ©, Guillaume; Parker, Alex N; Pedersen, Nancy L; Peltonen, Leena; Pennell, Craig E; Pharoah, Paul; Polasek, Ozren; Plump, Andrew S; Pouta, Anneli; Porcu, Eleonora; Rafnar, Thorunn; Rice, John P; Ring, Susan M; Rivadeneira, Fernando; Rudan, Igor; Sala, Cinzia; Salomaa, Veikko; Sanna, Serena; Schlessinger, David; Schork, Nicholas J; Scuteri, Angelo; SegrΓ¨, Ayellet V; Shuldiner, Alan R; Soranzo, Nicole; Sovio, Ulla; Srinivasan, Sathanur R; Strachan, David P; Tammesoo, Mar-Liis; Tikkanen, Emmi; Toniolo, Daniela; Tsui, Kim; Tryggvadottir, Laufey; Tyrer, Jonathon; Uda, Manuela; van Dam, Rob M; van Meurs, Joyce B J; Vollenweider, Peter; Waeber, Gerard; Wareham, Nicholas J; Waterworth, Dawn M; Weedon, Michael N; Wichmann, H Erich; Willemsen, Gonneke; Wilson, James F; Wright, Alan F; Young, Lauren; Zhai, Guangju; Zhuang, Wei Vivian; Bierut, Laura J; Boomsma, Dorret I; Boyd, Heather A; Crisponi, Laura; Demerath, Ellen W; van Duijn, Cornelia M; Econs, Michael J; Harris, Tamara B; Hunter, David J; Loos, Ruth J F; Metspalu, Andres; Montgomery, Grant W; Ridker, Paul M; Spector, Tim D; Streeten, Elizabeth A; Stefansson, Kari; Thorsteinsdottir, Unnur; Uitterlinden, AndrΓ© G; Widen, Elisabeth; Murabito, Joanne M; Ong, Ken K; Murray, Anna
- Year
- 2010
- Journal
- Nature genetics
- PMID
- 21102462
- DOI
- 10.1038/ng.714
- PMCID
- PMC3140055
To identify loci for age at menarche, we performed a meta-analysis of 32 genome-wide association studies in 87,802 women of European descent, with replication in up to 14,731 women. In addition to the known loci at LIN28B (P = 5.4 Γ 10β»βΆβ°) and 9q31.2 (P = 2.2 Γ 10β»Β³Β³), we identified 30 new menarche loci (all P < 5 Γ 10β»βΈ) and found suggestive evidence for a further 10 loci (P < 1.9 Γ 10β»βΆ). The new loci included four previously associated with body mass index (in or near FTO, SEC16B, TRA2B and TMEM18), three in or near other genes implicated in energy homeostasis (BSX, CRTC1 and MCHR2) and three in or near genes implicated in hormonal regulation (INHBA, PCSK2 and RXRG). Ingenuity and gene-set enrichment pathway analyses identified coenzyme A and fatty acid biosynthesis as biological processes related to menarche timing.
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| Bivariate genome-wide association analyses identified genes with pleiotropic effects for femoral neck bone geometry and age at menarche. | Ran S et al. | β | 2013 | β |
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| Genome-wide association analysis implicates elastic microfibrils in the development of nonsyndromic striae distensae. | Tung JY et al. | β | 2013 | β |
| Genome-wide association and longitudinal analyses reveal genetic loci linking pubertal height growth, pubertal timing and childhood adiposity. | Cousminer DL et al. | β | 2013 | β |
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| Genome-wide association study of primary tooth eruption identifies pleiotropic loci associated with height and craniofacial distances. | Fatemifar G et al. | β | 2013 | β |
| Identifying opportunities for cancer prevention during preadolescence and adolescence: puberty as a window of susceptibility. | Biro FM et al. | β | 2013 | β |
| Investigation of peripubertal expression of Lin28a and Lin28b in C57BL/6 female mice. | Grieco A et al. | β | 2013 | β |
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| Reproductive factors and its association with peripheral arterial disease in women aged 52-81 years: the KORA F4 study. | StΓΆckl D et al. | β | 2013 | β |
| Role of puberty in multiple sclerosis risk and course. | Chitnis T | β | 2013 | β |
| Screen time behaviours may interact with obesity genes, independent of physical activity, to influence adolescent BMI in an ethnically diverse cohort. | Graff M et al. | β | 2013 | β |
| The Adult Netherlands Twin Register: twenty-five years of survey and biological data collection. | Willemsen G et al. | β | 2013 | β |
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| Absence of functional LIN28B mutations in a large cohort of patients with idiopathic central precocious puberty. | Silveira-Neto AP et al. | β | 2012 | β |
| Age at menarche is associated with prediabetes and diabetes in women (aged 32-81 years) from the general population: the KORA F4 Study. | StΓΆckl D et al. | β | 2012 | β |
| ApoE genotypes are associated with age at natural menopause in Chinese females. | Meng FT et al. | β | 2012 | β |
| Appetite regulation genes are associated with body mass index in black South African adolescents: a genetic association study. | Lombard Z et al. | β | 2012 | β |
| A single-nucleotide polymorphism in the EAP1 gene is associated with amenorrhea/oligomenorrhea in nonhuman primates. | Lomniczi A et al. | β | 2012 | β |
| Association between GNRHR, LHR and IGF1 polymorphisms and timing of puberty in male Angus cattle. | LirΓ³n JP et al. | β | 2012 | β |
| Association of age at menarche with metabolic syndrome and its components in rural Bangladeshi women. | Akter S et al. | β | 2012 | β |
| Association of LIN28B with adult adiposity-related traits in females. | Leinonen JT et al. | β | 2012 | β |
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| Functional study of risk loci of stem cell-associated gene lin-28B and associations with disease survival outcomes in epithelial ovarian cancer. | Lu L et al. | β | 2012 | β |
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| Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function. | Hancock DB et al. | β | 2012 | β |
| Greater impact of melanocortin-4 receptor deficiency on rates of growth and risk of type 2 diabetes during childhood compared with adulthood in Pima Indians. | Thearle MS et al. | β | 2012 | β |
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| Insights into Assessing the Genetics of Endometriosis. | Rahmioglu N et al. | β | 2012 | β |
| LIN28B polymorphisms are associated with central precocious puberty and early puberty in girls. | Park SW et al. | β | 2012 | β |
| Mechanisms affecting neuroendocrine and epigenetic regulation of body weight and onset of puberty: potential implications in the child born small for gestational age (SGA). | Roth CL et al. | β | 2012 | β |
| Modernization and the onset of overweight and obesity in Bougainville and Solomon Islands children: cross-sectional and longitudinal comparisons between 1966 and 1986. | Weitz CA et al. | β | 2012 | β |
| Pairwise shared genomic segment analysis in three Utah high-risk breast cancer pedigrees. | Cai Z et al. | β | 2012 | β |
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| Study of leptin levels and gene polymorphisms in patients with central precocious puberty. | Su PH et al. | β | 2012 | β |
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| Dual function of Sec16B: Endoplasmic reticulum-derived protein secretion and peroxisome biogenesis in mammalian cells. | Tani K et al. | β | 2011 | β |
| Estrogen Increases c-Fos expression in the paraventricular nucleus along with its anorexic effect in developing rats. | Chi JH et al. | β | 2011 | β |
| Genetic basis and variable phenotypic expression of Kallmann syndrome: towards a unifying theory. | Mitchell AL et al. | β | 2011 | β |
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| Genome-wide association study identifies four loci associated with eruption of permanent teeth. | Geller F et al. | β | 2011 | β |
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| New genetic factors implicated in human GnRH-dependent precocious puberty: the role of kisspeptin system. | Teles MG et al. | β | 2011 | β |
| Piecing together the FTO jigsaw. | Frayling TM et al. | β | 2011 | β |
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| Vitamin D deficiency and age at menarche: a prospective study. | Villamor E et al. | β | 2011 | β |