A genomewide association study of nicotine and alcohol dependence in Australian and Dutch populations.
- Authors
- Lind, Penelope A; Macgregor, Stuart; Vink, Jacqueline M; Pergadia, Michele L; Hansell, Narelle K; de Moor, Marleen H M; Smit, August B; Hottenga, Jouke-Jan; Richter, Melinda M; Heath, Andrew C; Martin, Nicholas G; Willemsen, Gonneke; de Geus, Eco J C; Vogelzangs, Nicole; Penninx, Brenda W; Whitfield, John B; Montgomery, Grant W; Boomsma, Dorret I; Madden, Pamela A F
- Year
- 2010
- Journal
- Twin research and human genetics : the official journal of the International Society for Twin Studies
- PMID
- 20158304
- DOI
- 10.1375/twin.13.1.10
- PMCID
- PMC3070599
Persistent tobacco use and excessive alcohol consumption are major public health concerns worldwide. Both alcohol and nicotine dependence (AD, ND) are genetically influenced complex disorders that exhibit a high degree of comorbidity. To identify gene variants contributing to one or both of these addictions, we first conducted a pooling-based genomewide association study (GWAS) in an Australian population, using Illumina Infinium 1M arrays. Allele frequency differences were compared between pooled DNA from case and control groups for: (1) AD, 1224 cases and 1162 controls; (2) ND, 1273 cases and 1113 controls; and (3) comorbid AD and ND, 599 cases and 488 controls. Secondly, we carried out a GWAS in independent samples from the Netherlands for AD and for ND. Thirdly, we performed a meta-analysis of the 10,000 most significant AD- and ND-related SNPs from the Australian and Dutch samples. In the Australian GWAS, one SNP achieved genomewide significance (p < 5 x 10(-8)) for ND (rs964170 in ARHGAP10 on chromosome 4, p = 4.43 x 10(-8)) and three others for comorbid AD/ND (rs7530302 near MARK1 on chromosome 1 (p = 1.90 x 10(-9)), rs1784300 near DDX6 on chromosome 11 (p = 2.60 x 10(-9)) and rs12882384 in KIAA1409 on chromosome 14 (p = 4.86 x 10(-8))). None of the SNPs achieved genomewide significance in the Australian/Dutch meta-analysis, but a gene network diagram based on the top-results revealed overrepresentation of genes coding for ion-channels and cell adhesion molecules. Further studies will be required before the detailed causes of comorbidity between AD and ND are understood.
No figures extracted from this document.
No entities extracted from this document yet.
No uploaded files.
In this knowledge base
External
| Title | Authors | Journal | Year | Link |
|---|---|---|---|---|
| Human genetics and epigenetics of alcohol use disorder. | Zhou H et al. | β | 2024 | β |
| New insights into the physiology and pathophysiology of the atypical sodium leak channel NALCN. | Monteil A et al. | β | 2024 | β |
| Common and distinguishing genetic factors for substance use behavior and disorder: an integrated analysis of genomic and transcriptomic studies from both human and animal studies. | Chang XW et al. | β | 2022 | β |
| Genome-wide associated variants of subclinical atherosclerosis among young people with HIV and gene-environment interactions. | He J et al. | β | 2022 | β |
| TrustGWAS: A full-process workflow for encrypted GWAS using multi-key homomorphic encryption and pseudorandom number perturbation. | Yang M et al. | β | 2022 | β |
| Gene-based association analysis reveals involvement of LAMA5 and cell adhesion pathways in nicotine dependence in African- and European-American samples. | Fan R et al. | β | 2021 | β |
| Genome-Wide Association Study of Opioid Cessation. | Cox JW et al. | β | 2020 | β |
| Association between polygenic risk for tobacco or alcohol consumption and liability to licit and illicit substance use in young Australian adults. | Chang LH et al. | β | 2019 | β |
| Associations between polygenic risk for tobacco and alcohol use and liability to tobacco and alcohol use, and psychiatric disorders in an independent sample of 13,999 Australian adults. | Chang LH et al. | β | 2019 | β |
| Associations of <i>BRAP</i> polymorphisms with the risk of alcohol dependence and scores on the Alcohol Use Disorders Identification Test. | Kim JW et al. | β | 2019 | β |
| Cross-Sectional Study to Characterise Nicotine Dependence in Central Vietnamese Men. | KΓ΅ks G et al. | β | 2019 | β |
| GWAS and network analysis of co-occurring nicotine and alcohol dependence identifies significantly associated alleles and network. | Xiang B et al. | β | 2019 | β |
| National Institute on Drug Abuse genomics consortium white paper: Coordinating efforts between human and animal addiction studies. | Cates HM et al. | β | 2019 | β |
| Human Genetics of Addiction: New Insights and Future Directions. | Hancock DB et al. | β | 2018 | β |
| Molecular, Neuronal, and Behavioral Effects of Ethanol and Nicotine Interactions. | Klenowski PM et al. | β | 2018 | β |
| A genome wide association study of fast beta EEG in families of European ancestry. | Meyers JL et al. | β | 2017 | β |
| Alcohol and nicotine codependence-associated DNA methylation changes in promoter regions of addiction-related genes. | Xu H et al. | β | 2017 | β |
| CHN2 Promoter Methylation Change May Be Associated With Methamphetamine Dependence. | Hao L et al. | β | 2017 | β |
| Comorbidity of Alcohol Use Disorder and Chronic Pain: Genetic Influences on Brain Reward and Stress Systems. | Yeung EW et al. | β | 2017 | β |
| Genetic variation in the exome: Associations with alcohol and tobacco co-use. | Otto JM et al. | β | 2017 | β |
| The genetic epidemiology of substance use disorder: A review. | Prom-Wormley EC et al. | β | 2017 | β |
| The genetics of alcohol dependence and alcohol-related liver disease. | Stickel F et al. | β | 2017 | β |
| Association Study of Gene Polymorphisms in GABA, Serotonin, Dopamine, and Alcohol Metabolism Pathways with Alcohol Dependence in Taiwanese Han Men. | Wu LS et al. | β | 2016 | β |
| Overview of the Genetics of Alcohol Use Disorder. | Tawa EA et al. | β | 2016 | β |
| An inexpensive, scalable behavioral assay for measuring ethanol sedation sensitivity and rapid tolerance in Drosophila. | Sandhu S et al. | β | 2015 | β |
| Associations between the orexin (hypocretin) receptor 2 gene polymorphism Val308Ile and nicotine dependence in genome-wide and subsequent association studies. | Nishizawa D et al. | β | 2015 | β |
| DAT1 and Alcohol Use: Differential Responses to Life Stress during Adolescence. | Stogner JM | β | 2015 | β |
| Drosophila and Caenorhabditis elegans as Discovery Platforms for Genes Involved in Human Alcohol Use Disorder. | Grotewiel M et al. | β | 2015 | β |
| Gene expression changes in serotonin, GABA-A receptors, neuropeptides and ion channels in the dorsal raphe nucleus of adolescent alcohol-preferring (P) rats following binge-like alcohol drinking. | McClintick JN et al. | β | 2015 | β |
| Genome-wide association analysis on five isolated populations identifies variants of the HLA-DOA gene associated with white wine liking. | Pirastu N et al. | β | 2015 | β |
| Genomic influences on alcohol problems in a population-based sample of young adults. | Edwards AC et al. | β | 2015 | β |
| Polymorphisms in early neurodevelopmental genes affect natural variation in alcohol sensitivity in adult drosophila. | Morozova TV et al. | β | 2015 | β |
| Potential relationship between single nucleotide polymorphisms used in forensic genetics and diseases or other traits in European population. | Pombar-Gomez M et al. | β | 2015 | β |
| Shared additive genetic influences on DSM-IV criteria for alcohol dependence in subjects of European ancestry. | Palmer RH et al. | β | 2015 | β |
| The structure and function of NKAIN2-a candidate tumor suppressor. | Zhao SC et al. | β | 2015 | β |
| Association between DPYSL2 gene polymorphisms and alcohol dependence in Caucasian samples. | Taylor A et al. | β | 2014 | β |
| Ethanol treatment of lymphoblastoid cell lines from alcoholics and non-alcoholics causes many subtle changes in gene expression. | McClintick JN et al. | β | 2014 | β |
| Genetics and genomics of alcohol sensitivity. | Morozova TV et al. | β | 2014 | β |
| Genetics of alcohol dependence: a review of clinical studies. | Samochowiec J et al. | β | 2014 | β |
| Genome-wide association study on detailed profiles of smoking behavior and nicotine dependence in a twin sample. | Loukola A et al. | β | 2014 | β |
| Identifying Genetic Variants for Addiction via Propensity Score Adjusted Generalized Kendall's Tau. | Jiang Y et al. | β | 2014 | β |
| Nematodes feel a craving--using Caenorhabditis elegans as a model to study alcohol addiction. | Zhu G et al. | β | 2014 | β |
| The sodium leak channel, NALCN, in health and disease. | Cochet-Bissuel M et al. | β | 2014 | β |
| A bivariate mann-whitney approach for unraveling genetic variants and interactions contributing to comorbidity. | Wen Y et al. | β | 2013 | β |
| Alcohol consumption in men is influenced by qualitatively different genetic factors in adolescence and adulthood. | Edwards AC et al. | β | 2013 | β |
| Association of a novel polymorphism of the Ξ²2-chimaerin gene (CHN2) with smoking. | Barrio-Real L et al. | β | 2013 | β |
| Common variants in HLA-DRA gene are associated with alcohol dependence in two Caucasian samples. | Pan Y et al. | β | 2013 | β |
| Genetics and epigenetics of alcohol dependence. | Nieratschker V et al. | β | 2013 | β |
| Genome-wide association studies of maximum number of drinks. | Pan Y et al. | β | 2013 | β |
| Genome-wide significant association signals in IPO11-HTR1A region specific for alcohol and nicotine codependence. | Zuo L et al. | β | 2013 | β |
| Over-expression of the miRNA cluster at chromosome 14q32 in the alcoholic brain correlates with suppression of predicted target mRNA required for oligodendrocyte proliferation. | Manzardo AM et al. | β | 2013 | β |
| Stress-response pathways are altered in the hippocampus of chronic alcoholics. | McClintick JN et al. | β | 2013 | β |
| The genetics of alcohol dependence. | Rietschel M et al. | β | 2013 | β |
| Whole brain and brain regional coexpression network interactions associated with predisposition to alcohol consumption. | Vanderlinden LA et al. | β | 2013 | β |
| ANAPC1 and SLCO3A1 are associated with nicotine dependence: meta-analysis of genome-wide association studies. | Wang KS et al. | β | 2012 | β |
| Association mapping of height and maturity across five environments using the sorghum mini core collection. | Upadhyaya HD et al. | β | 2012 | β |
| Association study of 45 candidate genes in nicotine dependence in Han Chinese. | Wei J et al. | β | 2012 | β |
| A systematic review of the A118G (Asn40Asp) variant of OPRM1 in relation to smoking initiation, nicotine dependence and smoking cessation. | Verhagen M et al. | β | 2012 | β |
| Chloride intracellular channels modulate acute ethanol behaviors in Drosophila, Caenorhabditis elegans and mice. | Bhandari P et al. | β | 2012 | β |
| CNS effects of CB2 cannabinoid receptors: beyond neuro-immuno-cannabinoid activity. | Onaivi ES et al. | β | 2012 | β |
| Convergence of genetic influences in comorbidity. | McEachin RC et al. | β | 2012 | β |
| Development of novel pharmacotherapeutics for tobacco dependence: progress and future directions. | Harmey D et al. | β | 2012 | β |
| Genome-wide association study identifies 5q21 and 9p24.1 (KDM4C) loci associated with alcohol withdrawal symptoms. | Wang KS et al. | β | 2012 | β |
| Genome-wide search for replicable risk gene regions in alcohol and nicotine co-dependence. | Zuo L et al. | β | 2012 | β |
| Identification of SSR markers associated with height using pool-based genome-wide association mapping in sorghum | Wang YH et al. | β | 2012 | β |
| Implications of central immune signaling caused by drugs of abuse: mechanisms, mediators and new therapeutic approaches for prediction and treatment of drug dependence. | Coller JK et al. | β | 2012 | β |
| Lipid environment modulates the development of acute tolerance to ethanol in Caenorhabditis elegans. | Bettinger JC et al. | β | 2012 | β |
| Oral Nicotine Self-Administration in Rodents. | Collins AC et al. | β | 2012 | β |
| Stable genetic effects on symptoms of alcohol abuse and dependence from adolescence into early adulthood. | van Beek JH et al. | β | 2012 | β |
| The genetic basis of addictive disorders. | Ducci F et al. | β | 2012 | β |
| The genetic basis of alcoholism: multiple phenotypes, many genes, complex networks. | Morozova TV et al. | β | 2012 | β |
| The genetics of alcohol dependence: advancing towards systems-based approaches. | Palmer RH et al. | β | 2012 | β |
| The role of ANKK1 and TTC12 genes on drinking behaviour in tobacco dependent subjects. | Lobo DS et al. | β | 2012 | β |
| A meta-analysis of two genome-wide association studies identifies 3 new loci for alcohol dependence. | Wang KS et al. | β | 2011 | β |
| A novel SNP in COMT is associated with alcohol dependence but not opiate or nicotine dependence: a case control study. | Voisey J et al. | β | 2011 | β |
| Convergent functional genomic studies of Ο-3 fatty acids in stress reactivity, bipolar disorder and alcoholism. | Le-Niculescu H et al. | β | 2011 | β |
| Family-based association analysis of alcohol dependence in the COGA sample and replication in the Australian twin-family study. | Wang KS et al. | β | 2011 | β |
| Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample. | Kendler KS et al. | β | 2011 | β |
| Genome-wide association studies identify genetic loci related to alcohol consumption in Korean men. | Baik I et al. | β | 2011 | β |
| Genome-wide association studies of alcohol dependence and substance use disorders. | Treutlein J et al. | β | 2011 | β |
| Heritability of problem drinking and the genetic overlap with personality in a general population sample. | de Moor MH et al. | β | 2011 | β |
| Lack of association between SNPs in the NEUROD2 gene and alcohol dependence in a German patient sample. | Zill P et al. | β | 2011 | β |
| Strong association of the alcohol dehydrogenase 1B gene (ADH1B) with alcohol dependence and alcohol-induced medical diseases. | Li D et al. | β | 2011 | β |
| An integrated genome research network for studying the genetics of alcohol addiction. | Spanagel R et al. | β | 2010 | β |